Sphingobacterium faecium: MUK51_14700
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Entry
MUK51_14700 CDS
T08637
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sfae
Sphingobacterium faecium
Pathway
sfae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MUK51_14700 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfae03021
]
MUK51_14700 (rpoC)
03400 DNA repair and recombination proteins [BR:
sfae03400
]
MUK51_14700 (rpoC)
Enzymes [BR:
sfae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MUK51_14700 (rpoC)
Transcription machinery [BR:
sfae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MUK51_14700 (rpoC)
DNA repair and recombination proteins [BR:
sfae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MUK51_14700 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
MC1
Motif
Other DBs
NCBI-ProteinID:
UXD68452
LinkDB
All DBs
Position
complement(3433989..3438266)
Genome browser
AA seq
1425 aa
AA seq
DB search
MSYKKDNKIKSNFTSITVSLASPETILERSSGEVVKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHISLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDMIIYYERYVVIQAGIKEDDGINYMDFLTEEEYLDILDTLPKENQYLDD
NDPQKFVAKMGAEALEELLKRIDLDKLSYDLRHQAANETSQQRKNEALKRLHVVEAFRGS
RDRIENRPEWMIVKIVPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPHLKLHECGLPKDMAAELYKPFIIRKMIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPTLVEGKAIQLHPLVCTAFNADFDGDQM
AVHLPLGNAAVLEAQVLMLAAHNILNPANGSPVTVPSQDMVLGLYYITKGRKSTPEQIVH
GEDMIFYSAEEVIIALNEKKIDLHAFIKVKTKIRTKDGSIVDTLLDTTVGRVIFNQVVPH
EVGFINELLTKKSLRNIIGEIVKTTGMARAAQFLDDMKELGFQTAFKGGLSFNLQDLNIP
DAKADLIQQATNEVEEVMNNYNMGFITNNERYNQIIDIWTRINNKLTSHVMDILSNDNQG
FNSVYMMLDSGARGSKEQIRQLCGMRGLMAKPQKSGSAGGEIIENPILSNFKEGLSVLEY
FISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVIDQDCGGLRGIYTTALKDNDDVV
EPLYDRILGRVSLYNVYDPETGELLVEANQDIEEDIAERIESSGIEGVEIRTVLTCECKR
GVCASCYGRNLASGKRVQLGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESQISS
KYAGTVEFENLRTVSQEGEDGTHQVVLGRSGEIKILDETRKVLFQQNIPYGSQLFVEEGN
KVAKGDKLVSWDPYNAVIISEFAGKVEFDAIVEGVTFREESDEQTGHKEKVIIETRDKTK
NPAIKILDKKGEVIRTYNIPVGAHVSVADGVTVKEGGILVKIPRSTGKTRDITGGLPRVT
ELFEARNPSNPAVVTEIDGVVTLGGVKRGNREISIESRDGQIKKYLVPLSKHILVQDNDF
IKAGMPLSDGSISPADILSIKGPSAVQHYIVNGIQEVYRLQGVKINDKHFETIVHQMMQK
VNIEDPGDTRFLEKEAVNKWDFMEENDSLYDKKVVVEAGDSNDLRPGQIVSLRKLREENS
SLRRRDLKLVEVRDAIPATSSPLLQGITRASLGTKSFISAASFQETTKVLNEAAIAGKRD
NLLGLKENVIVGHLIPSGTGLRQYGNIIVGSREEYDQLLASKEED
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaagataataaaattaaaagcaactttacatcaattactgtaagcttg
gcgtctccagaaacaatcttagagcgttcaagtggtgaagttgtaaaaccggaaacgatt
aactatcgtacctacaaaccagaacgtgatggtttattctgtgagcgtatctttggtcct
gtaaaggattatgaatgtcactgtggtaaatacaaacgtatccgttataaaggtattgta
tgtgaccgttgtggtgttgaagttacggagaaaaaagtacgtcgtgagcgtatgggacac
atttcattagtggttcctgttgcacacatctggtatttccgctctcttccaaataaaatt
ggttatttattaggtcttcctactaaaaaactggacatgattatctactacgaaagatat
gtagttattcaagctggtattaaagaggatgatggtatcaactatatggacttcttgact
gaagaggaatatttagatattttagatacattacctaaagaaaaccaatatttagatgac
aacgatcctcaaaagttcgttgctaaaatgggtgctgaggcattagaagaattattgaaa
cgtattgatttagataaattatcttatgatttacgtcaccaagcggctaacgaaacttct
cagcaacgtaaaaatgaggctttaaaacgtcttcatgttgtagaggcattccgtggttca
agagatcgtattgaaaatcgtcctgaatggatgatcgtaaaaatcgttcctattattcca
ccagaattacgtccattagttcctttagatggtggtcgttttgcgacttcagatttaaat
gatttatatcgtcgtgttattattcgtaataaccgtttgaaacgtttaattgaaattaaa
gctccagaagtaattttacgtaatgaaaaacgtatgttacaagaggctgtggattcatta
ttcgataactcacgtaaagttaacgcagtgaaaactgaaggtaaccgtgcgttgaaatca
ttatctgatatcttaaaaggtaaacaaggtcgtttccgtcaaaacttattaggtaagcgt
gtggattattcggctcgttcggtaatcgtcgttggacctcacttgaaattacatgagtgt
ggtttacctaaggatatggcagcagaactttacaaaccgtttatcattcgtaagatgatc
gagcgtggtatcgtgaaaactgtaaaatcagctaagaaaattgtagatcgtaaagatcca
gttgtttgggatatattagaaaacgtgttgaaaggtcatccggtattattaaaccgtgca
cctacgttacacagattgggtattcaggctttccaacctactttagtagagggtaaagct
attcaattacacccattagtgtgtaccgcgtttaacgccgattttgatggtgaccagatg
gcagtccacttacctttaggtaatgctgcagttttggaagctcaagttttaatgttggca
gcgcacaatattttaaaccctgcaaatggttctcctgtaacagtaccttctcaggatatg
gttttgggtctttattatatcacaaaaggccgaaaaagtactccagaacaaatcgttcat
ggtgaagatatgattttctattctgcagaagaggttattatcgctttgaatgagaagaaa
attgatttgcatgcttttattaaggtaaaaactaaaatcagaactaaagatggtagtatc
gttgatactttattagatacaacagttggtcgtgttatattcaaccaagttgttcctcat
gaagtgggatttatcaacgaattattaacgaaaaaatctttacgtaatatcattggagaa
attgtgaaaactacgggtatggctcgtgctgcacagtttttggatgatatgaaagaatta
ggtttccagacagcttttaaaggtggtctatcgttcaacttgcaagatttgaacattcct
gatgctaaagctgatttaattcaacaagcgacaaacgaagttgaagaagtaatgaataac
tataacatgggtttcattaccaacaacgaacgttataatcaaatcatcgatatttggaca
cgtatcaacaataagttgacatcacacgtaatggatatcttatcgaatgacaaccaagga
ttcaactctgtatatatgatgcttgattctggtgcacgtggttcgaaagagcaaattcgt
cagttgtgtggtatgcgtggtttgatggctaaacctcaaaaatcaggttcagcaggtggt
gaaattattgaaaacccgattttatcaaactttaaagaaggtctttcagtattagaatac
tttatctctacccacggtgcacgtaaaggtcttgccgatacggcattaaaaacggcggat
gcgggttacttaactcgtcgtttacatgacgttgcacaagatatgatcgttattgatcaa
gactgtggaggtttaagaggtatttatacaacggcattaaaagataatgatgatgttgta
gaaccattatacgatcgtattttaggtcgtgtatcgttgtacaatgtatatgatccagaa
acaggtgagttgttagtagaggctaatcaagacatcgaagaagatattgctgaacgcatt
gaatcttcaggtattgaaggtgttgagattcgtaccgtgttaacatgtgaatgtaaacgt
ggtgtatgtgctagctgttacggtcgtaacttggcgtctggtaaacgtgttcaattgggt
gaagctgtaggtgtaattgcagcacaatcaattggtgagccaggtacacagttgacactt
cgtacgttccacgtcggtggtacggcttctaacattgctgctgagtcccagatttcttct
aaatatgccggtacagttgagtttgaaaacttacgtacggtatctcaagaaggtgaagat
ggtacgcatcaagtagtattgggtcgttctggtgagatcaaaattttggatgaaactaga
aaagtattattccaacaaaatatcccttacggttctcaattgttcgttgaagaaggaaat
aaggttgctaaaggtgataagttagtatcatgggatccatataatgctgttattatctcg
gagtttgctggtaaagtggagtttgatgcgattgtagaaggtgtaactttccgcgaagag
tcagatgagcaaactggtcacaaagagaaagtaatcattgaaactcgtgataaaacgaaa
aaccctgcgatcaagatcttagacaaaaaaggtgaagtaattcgtacgtacaacattcca
gtaggagctcacgtttctgtagcggatggtgtaactgtaaaagaaggtggtatcttagtt
aagattcctcgttctacaggtaaaactcgcgatattacggggggtctacctcgtgtaacg
gaattattcgaagcacgtaacccttctaatccagctgtagtaactgaaattgatggtgtt
gtaactttaggtggtgttaaacgtggtaaccgtgagatttctatcgaatcacgcgatggc
caaattaaaaagtaccttgttccactttcgaaacatatcttagtacaggacaatgacttt
attaaagctggtatgcctttatcagatggttcgatctctccagcagatatcttatcaatc
aaaggtccatcagcagtacagcattatatcgtaaatggtattcaagaggtttaccgtctt
caaggtgtaaaaatcaatgataaacattttgaaacaattgttcaccaaatgatgcaaaaa
gtgaatattgaagatccaggagatacacgtttcttagagaaagaggctgttaacaaatgg
gacttcatggaagaaaatgattcgctttacgacaaaaaagttgtggtagaggctggtgat
tctaatgatttacgtccaggtcaaattgtttctttacgtaagttgcgtgaagaaaactca
agcttgagacgtcgtgatttaaaattagtagaggtccgtgacgcaattcctgcgacttca
agtcctttattacaaggtatcactagagcttcattaggtacgaaatcatttatctctgca
gcatctttccaagagactacaaaagtcttgaacgaagcagctatagcaggtaaacgtgat
aatttattaggtttgaaagagaatgtaattgtgggtcacttaattccttcaggtacaggt
cttcgtcaatatggtaacattatcgtaggttcacgtgaagaatacgatcaattattagct
tcgaaagaagaagattaa
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