Sphingobacterium faecium: MUK51_17060
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Entry
MUK51_17060 CDS
T08637
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sfae
Sphingobacterium faecium
Brite
KEGG Orthology (KO) [BR:
sfae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfae03016
]
MUK51_17060
Enzymes [BR:
sfae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MUK51_17060
Transfer RNA biogenesis [BR:
sfae03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MUK51_17060
Prokaryotic type
tRNA splicing ligases
MUK51_17060
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UXD68893
LinkDB
All DBs
Position
complement(3981300..3982721)
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AA seq
473 aa
AA seq
DB search
MENKRINGNDLIALGYEENFALGEALKINKKRLGFTREEMLLKFAEVLAAPEMYMEDEVF
KPLAQALLNVDEVAKATISLKEGKQDYSIYGESQIEEGALRQMDLAMKLPVAVAGALMPD
AHQGYGLPIGGVLATHHAVIPYGVGVDIGCRMALSIFDVPEEHLYAHHDFYKKVIMDHTK
FGAGHGYLKHERADHAVLASKAFETNDFIRQLKDKAWTQLGSSGGGNHFVEFGVMEFKEA
DAELGMEKGRYVALLTHSGSRGLGATIADHYTKLAKKLCPLPYEAQNLAYMGLDTAEGQE
YWLAMNLAGDYASACHEVIHEKISKALGAERLAMVENHHNFAWKELWKGEEVIVHRKGAT
PAGKGVLGIIPGSMATPGFLVRGKGKEEAIQSASHGAGRLMSRTKAIKTIARKDLKSMLS
DHRITLIGAGLDEAPMAYKNIHEVMAAQEDLVDIIASFSPKIVRMADDGSRED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataaaagaataaatggcaatgatttaattgctttgggatatgaagagaatttt
gctttaggggaagcgttgaaaattaataaaaagagattggggtttacccgagaggagatg
ttgttgaagtttgcggaagtactggctgctccagaaatgtatatggaggatgaagtattt
aaaccgctggcgcaagctcttttaaatgttgatgaagtggctaaagctacgatttcttta
aaagaggggaagcaagactacagcatctatggtgagtctcagattgaagagggcgcattg
cgccaaatggatctggcgatgaaacttcctgttgcagtggcgggggcattaatgccggat
gcgcaccaaggatatggtttgccaatcggtggggtattggcgactcatcatgcggtcatt
ccttatggtgtgggtgttgatatcggttgtcgaatggcactgtctatttttgatgtcccc
gaagagcatctgtatgcgcatcatgatttttataagaaggtgattatggatcataccaaa
tttggtgctggacatggttacttgaaacatgaacgtgccgatcatgcagtgctagcgagt
aaggcttttgaaacgaatgattttattcgccaattaaaggataaggcctggacacaatta
ggttcttctggtggaggaaatcactttgttgaatttggggtgatggagtttaaggaggca
gatgcggagcttggtatggagaaaggacgatatgttgctttattgactcattcgggatct
aggggattgggcgccactattgccgatcattatactaaactggctaaaaagctttgtcct
ttgccttacgaggctcaaaatttggcttatatgggacttgatacagcggaaggtcaagaa
tattggttagcgatgaaccttgcgggggactatgcttcggcgtgtcatgaagtaattcac
gagaaaatcagtaaggctttaggtgctgaacgattggcgatggttgaaaatcatcataat
tttgcatggaaagagttgtggaaaggggaggaggtcatcgtacatcgtaaaggtgcaact
cctgcaggtaaaggggtgctgggtatcattcctggatcgatggcaactcctggtttctta
gtccgaggaaaaggtaaggaagaggctattcaatcggcttcacatggcgcgggtcgattg
atgagccgcacgaaagctataaaaacgatagcacgtaaagatttgaaatccatgttgtca
gatcatcgtatcacattgatcggtgctggactggatgaggccccaatggcttataaaaat
attcacgaggtgatggctgcgcaagaagatctggtggatattatcgctagtttctcaccc
aaaattgtgcgtatggctgatgatggaagccgcgaggattga
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