Sulfitobacter faviae: PL335_07090
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Entry
PL335_07090 CDS
T08789
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfav
Sulfitobacter faviae
Pathway
sfav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PL335_07090 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfav03400
]
PL335_07090 (mfd)
Enzymes [BR:
sfav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PL335_07090 (mfd)
DNA repair and recombination proteins [BR:
sfav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PL335_07090 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
MFD_D3
AAA_30
RecG_dom3_C
SecA_DEAD
UB2H
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WCE68104
LinkDB
All DBs
Position
1425559..1429029
Genome browser
AA seq
1156 aa
AA seq
DB search
MNDPRNITLSGVPEGYDARAILDEIAKGGQPVVHVARDDKRMAAMQAALRFYAPDMPVVT
FPGWDCLPYDRVSPNADISARRMATLAALVHGMPDQFVLLTTLNAASQRIPARDTLRDAA
FAARVGSRIDEKALRAFLVRMGFVQSPTVMEPGDYAVRGGIIDIYPPGDLGPVRLDLFGD
VLDGARRFDPATQRTTEKLDLVELAPVSEVILDEAAITRFRQNYRIEFGAAGTDDPLYEA
ISAGRKHQGAEHWLAFFHDDLETLFDYLPKATVTLDDQLTPMRIARWETIEDQYETRKLA
MKTRSKMDSVYKPAPPEGLYLTDEAWTQALLDHRVIQFNPLPQPTGPGVLDAGARLGRNF
APERQQESVSLFGALAAHIKAKLEVGPVLIASYSEGARERLTGLIEDEGLAEAIPVMDAA
RIGKRGLHLAVWALEHGFEAPGMTVISEQDVLGDRLIRAPKRKRRAENFLTEAQSLSPGD
LVVHVDHGIGRYHGMEVVAAAGAAHECLVLEYAEQSRLYLPVENIELLSRYGHEEGLLDK
LGGGAWQSKKAKLKERIRETADKLIRIAAERSLRKAPVLDPPPGMWDAFSARFPYTETDD
QLRAIGDVIDDLTSGNPMDRLVCGDVGFGKTEVAMRAAFVAAMSGVQVAVIAPTTLLARQ
HYKSFAERFRGFPINVRQLSRFVSAKEAAATREGMAKGTVDIVIGTHALLAKGIRFNDLG
LLIIDEEQHFGVTHKERLKALRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRL
SIRTYVSEFDAVTIREALLREHYRGGQSFYVVPRVSDLREIEEFLKAQLPELTYVVAHGQ
MAPGELDDRMNAFYDGKFDILLATTIVESGLDIPTANTMIVHRADMFGLAQLYQIRGRVG
RSKTRAYAYLTTKPRAKLTDTAQKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGEEQS
GQMRDVGFELYQSMLEEAIAKIKAGELEGLSEADEQWAPQINLGVPVLIPEDYVPDLDVR
LGLYRRLSELSTKVELEGFAAELIDRFGKLPKEVNTLMLVVRIKAMCKRAGIAKLDGGPK
GATIQFHNDKFASPEGLVKFIQDQRGLAKVKDNKIVVRRDWKTDADKIKGAFAIARDLAE
HVIAKEKTAKKAKAKG
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatccgcgcaatatcaccctctccggcgttcccgaaggctatgatgcccgcgcc
atcctcgatgaaatcgccaagggcggccagccggtggtccatgtggcgcgtgatgacaaa
cgcatggcggcgatgcaggccgccttgcggttctacgcccccgacatgccggtcgtcacc
ttcccgggctgggattgtttgccctatgaccgggtgtcacccaacgccgatatctcggcc
cggcggatggcgacgttggcggcgctggtgcacgggatgcccgatcagttcgtcctgctg
acgaccttaaacgcggccagccaacgcattcccgcccgcgacaccctgcgcgatgcggcc
tttgccgctcgcgtcggcagccggatcgacgaaaaggcgctgcgcgcgtttctggtgcgc
atgggctttgtgcaaagccccacggtgatggagccgggcgattacgccgtgcgcggcggg
atcatcgacatttacccgcccggtgatcttggcccggtacggcttgatctcttcggcgac
gtgctggatggtgcgcggcggtttgatccggcgacgcagcggacgaccgaaaagcttgat
ctggtggaacttgccccggtgagcgaggtcatcctcgacgaggccgcgatcacccggttc
cggcagaactaccgcatcgaattcggcgcggcaggcaccgatgatccgctttatgaggcg
atcagcgcgggccgcaaacatcagggcgcggagcattggctggcgtttttccacgacgat
ctggaaacgctttttgattatctgcccaaggcgacggtcactctagacgatcaactgacc
ccgatgcggatcgcccggtgggaaaccatcgaagaccagtatgagacccgcaaactggcg
atgaagacgcgctcgaagatggacagcgtgtacaaaccggccccacctgaggggctgtac
ctgaccgatgaggcctggacccaagcgttgctggatcaccgcgtcatccagttcaacccg
ttgccgcagcctacggggccgggagtgctggatgcaggcgcgcggctcgggcgcaacttc
gcccctgagcgtcagcaggaatccgtaagtcttttcggtgctttggccgcgcatattaaa
gcaaagcttgaagttgggccggtgctgatcgccagctactccgaaggcgcgcgggagcgc
ctgaccgggctgatcgaagacgaaggtctggccgaggcgatcccggtgatggatgccgcc
cgcatcggcaagcgcgggctgcatctggcggtttgggcgttggaacatgggttcgaagcg
ccggggatgacggtgatctccgaacaggacgtgctgggcgaccgtctgatccgtgcgccc
aaacgcaagcgccgggccgagaacttcctgaccgaggcccaaagcctcagccccggcgat
ctggtggttcatgtcgaccacggcatcgggcgctatcacgggatggaggtcgtcgccgcc
gcaggcgccgcgcatgagtgcctcgtgctggaatacgccgaacagtcaaggctttacctg
ccggtggagaatatcgaactgctgtcgcgctacggccatgaggaagggcttttggacaag
ctcggcggcggcgcatggcaatccaaaaaggccaagctcaaagagcgcattcgcgagacg
gcggacaagctcatccgcatcgccgccgaacgcagcctgcgtaaagcgcccgtgctcgac
ccgccgccggggatgtgggacgccttctcggcccgttttccttacacggaaaccgacgac
cagcttcgcgccatcggtgatgtgatcgacgatctgacctccggcaacccgatggaccgt
ctggtctgcggcgatgtgggtttcggcaagaccgaggtggcgatgcgcgcggccttcgtc
gcggccatgtcgggcgtgcaggtcgcggtgatcgcgccgacgacgctgctcgcgcgtcag
cactacaagagcttcgcggaacgtttccgcggcttcccgatcaacgtgcggcaactcagc
cgcttcgtctcggccaaggaggcggcggcgacgcgtgaggggatggccaagggcacggtc
gatatcgtgatcggcacccatgcgctgctggcaaaggggattcgtttcaacgacctcggc
cttttgattattgatgaagaacaacactttggcgtcacccataaggagcggttgaaggcg
ctgcgcacggacatccatgtgctgaccctcaccgccacgccgatcccgcgcaccctgcaa
ctgtcgctgacgggcgtgcgcgatctgtcgatcatcggcacgccacccgtggaccgtctg
tcgatccgcacctatgtcagcgagttcgacgcggtaaccatccgcgaggcgctcctgcgc
gagcattaccgcggcgggcagagcttctatgtcgtgccgcgcgtcagcgacctgcgcgag
atcgaggagttcctgaaggcgcagctgccagagttgacctacgtcgtcgcccacggccag
atggcgccgggggagctcgacgaccggatgaacgctttctacgacggcaagttcgacatt
ctgttggccacgaccatcgtggaatccggcctcgacatccccaccgccaacacgatgatc
gtgcaccgcgcggatatgttcggactggcgcagctttatcaaatccggggccgcgtgggg
cgctcgaaaacccgcgcctatgcctatctcacgaccaagccacgcgcgaagctgaccgac
acggcgcagaaacgcctgcgggtgctgggcagcctcgacacgctcggcgcgggcttcacg
ctggcctcccaagacctcgacattcgcggcgcgggcaacctgctgggcgaagaacagtcc
ggccagatgcgcgacgtgggtttcgagctttatcagtccatgctggaagaggcgatcgcc
aagatcaaggcgggcgaacttgaggggctgtcggaggccgacgagcaatgggcgccgcag
atcaaccttggcgtgccggtgctgattcccgaagactatgtgcctgacctcgacgtgcgg
ctcggcctctaccgtcgtctcagcgagctttcgaccaaggttgagctggaaggcttcgcc
gccgagctgatcgaccgtttcggcaagctgccgaaggaggtcaacacgctgatgctggtg
gtgcggatcaaggcgatgtgcaaacgcgccgggatcgctaagctcgacggcgggccaaag
ggcgcgacgatccagttccacaacgacaagttcgcctcgcccgaggggttggtgaagttc
attcaagaccagcgcgggctggcgaaggtgaaggacaacaagatcgtcgtgcgccgggat
tggaagacggatgccgataagatcaaaggcgcctttgccatcgcacgcgacttggccgaa
catgtaatcgccaaggaaaagaccgcaaaaaaggccaaggcgaagggctaa
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