Sulfitobacter faviae: PL335_08120
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Entry
PL335_08120 CDS
T08789
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sfav
Sulfitobacter faviae
Pathway
sfav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PL335_08120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfav03019
]
PL335_08120
03009 Ribosome biogenesis [BR:
sfav03009
]
PL335_08120
Enzymes [BR:
sfav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PL335_08120
Messenger RNA biogenesis [BR:
sfav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PL335_08120
Ribosome biogenesis [BR:
sfav03009
]
Prokaryotic type
rRNA processing factors
PL335_08120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WCE65375
LinkDB
All DBs
Position
complement(1641791..1644697)
Genome browser
AA seq
968 aa
AA seq
DB search
MSKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADRQALLEEERAYAEAQAAKDDEEEKPKRTRSRSRSR
SKSQAAETNSDDAVATAEVAEENSDQIAGMETVDLDSEEGSSPMERVAETPVEEPENDAA
EGDIAKAEDAAPAKADDAAKAEDADAKGDAQADDEDADGEDKGSDATAKDDSIESVADED
DSEDIRPVRKPRPRRYKIQEVIKVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPN
TARGGGISRKITNAADRKKLKEIATEIEVPKGAGLIVRTAGAKRTKAEIKRDYEYLQRLW
EQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNREIDEIHVEGERGYRIAKDFMKMIMPSH
AKNVKLYNESLPLFARYQVESYLSGMFNPTVQLPSGGYIVIGVTEALVAIDVNSGRATKE
GSIEQTALKTNLEAADEVARQLRLRDLAGLIVIDFIDMDEGKNNAAVEKRMKDRLKTDRA
RIQVGRISGFGLMEMSRQRLRPGMIEATTQPCHACHGTGLVRSDDNLALSIIRQIEEEGT
RRRSREVLVRAPVGIANFLMNQKREHIAHIEMRYGMSVRIEGDPSLVSPDFHIEKFKTAT
RTVPPVSDHVVSVDTSLMDQIDEDESAAEAEEAPAAQDASPSENGNGNGNGEEGEGKSKR
RRRRRRSRGGRGRNGNGDQQNGAEDQNGAQQQDEAKSDEGEKTAPVEAEAPQAEAEAAPA
AEEKPKPKSRSRSRKPKAEIAPEAEPAPEALAAAEGEAPKVSAEAEGEEPPKPKAKRSRR
TKKPAADAAEETVSADAVASEEEAAPAPKPKRRSRAKAKPVEPVAEATPDAMAEALPSEA
PIAAPSPETATPVAEAPQPEPQPDPAPQPVEAEAPAAETAPEPVAEKVEEQPAEKPKPKR
RGWWSLGS
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagaaaatgcttatcgatgccacccacgccgaggaaactcgggtcgtggtcgtg
gacggaaacaaggtcgaagaattcgattttgaatcggaaaacaaacgccagcttgctggc
aatatctatctagccaaggttacacgggtcgaaccgtcgcttcaggcggcctttgtcgac
tatggcggcaaccgtcacggtttcctcgctttctcggaaatccaccccgattattaccag
attcccgtggccgaccgtcaggcgctgctggaagaagagcgcgcctatgccgaagcgcag
gccgccaaggatgacgaagaagaaaaacccaagcggacccgctcgcggtcgcgtagccgg
tcgaaaagccaagcggccgagaccaacagcgatgatgccgtagccaccgccgaggtcgcc
gaggaaaacagcgatcagatcgcgggcatggaaaccgtcgatctcgacagcgaagagggc
agttcgcccatggagcgggtcgcggagacgccggttgaagagcccgagaatgatgcggcg
gagggtgatatcgccaaggccgaggacgcggccccggccaaggcggatgacgcggcaaag
gccgaggatgccgacgccaagggtgacgcgcaggccgacgatgaagacgccgatggcgag
gacaaaggcagcgatgccacggcgaaggacgattccatcgaatccgtcgccgatgaggac
gacagcgaagacatccgccccgtgcgcaaaccgcgcccgcgccgctacaagattcaagaa
gtcatcaaggtccgccagatcctgctggtgcaggtcgtcaaggaagagcgcggcaacaag
ggtgcggcgctgaccacctatctcagcctcgccggtcgttactgcgtgctaatgcccaac
accgcccgcggtggcggcatcagccgcaagatcaccaatgctgccgaccgcaagaagctc
aaggaaatcgcgaccgagattgaggtgccgaaaggtgccggcctcatcgtgcgcaccgcc
ggggcgaaacgcaccaaggccgagatcaagcgcgattacgaatacctccagcgtctctgg
gaacagatccgcgagttgacgctgaagtccatcgcgcctgccaaaatctacgaggaaggc
gatctgatcaaacgctcgatccgcgacctctacaatcgcgagatcgacgagattcacgtc
gagggcgagcgcggctaccgcatcgccaaggacttcatgaaaatgatcatgccgtcccac
gccaagaacgtgaagctctacaacgagagcctgccgctcttcgcccgctatcaggtggaa
agctacctctcgggcatgttcaaccccacggtgcaactgccctcgggcggctatatcgtg
atcggcgtgaccgaagcactggtggcgatcgacgtgaactcgggccgggccaccaaagaa
ggctcgatcgaacagaccgcgctcaagaccaaccttgaagccgccgacgaggtcgcacgc
cagctgcgtctgcgtgaccttgccgggctcatcgtgatcgacttcatcgacatggacgag
ggcaagaacaacgccgccgtcgaaaagcgcatgaaggaccggctcaagaccgaccgcgcg
cgcattcaggtgggccgcatctcgggcttcggcctgatggaaatgtcgcgccagcgcctg
cgccccggcatgatcgaggcgacgacccagccttgccacgcctgccacggcaccggcctc
gtgcgctcggacgataacctcgccctgtcgatcatccgccagatcgaagaagaaggcacc
cgccgccgctcccgcgaagtactggtgcgcgcgcccgtgggcatcgccaacttcctgatg
aaccaaaagcgcgagcatatcgcccatattgaaatgcgctacggcatgtccgtgcggatc
gaaggcgatccgtcgctggtcagccccgacttccacatcgagaagttcaagacggccacg
cgcaccgtgccgcccgtctcggatcacgtcgtctcggtcgatacttccctcatggatcaa
atcgacgaggatgagagcgccgccgaggccgaagaggcccccgccgcacaggacgccagc
ccctccgagaacgggaacggcaatggcaacggtgaagagggtgagggcaaatccaagcgc
cgccgccgccgtcgccgcagccggggtggccgtggccgcaatggcaatggcgatcagcag
aacggtgcagaggatcaaaacggtgctcagcagcaggacgaggcgaaatcggacgagggc
gagaaaaccgcgccggtagaggcagaagccccgcaggccgaagcggaagccgcgcccgcc
gccgaggagaagcccaagccgaaatcccgcagccgctcgcgcaagcctaaggccgaaatc
gctcccgaagcggaacccgcgcccgaagcccttgccgccgcagaaggcgaagcgccgaag
gtcagcgccgaggccgaaggggaggagccccccaagcccaaggccaagcgtagccgtcgg
accaagaaacccgcagccgacgcggcggaagagaccgtgagcgcagacgccgtggcaagt
gaggaagaggccgcacccgcgccgaagcccaagcgccgcagccgggccaaggccaagccg
gtcgagccggtcgccgaagccacgcccgatgcaatggccgaagccctgccgagtgaagcg
cccatcgcggccccgtcaccggagacggcgacgcccgtcgcggaagcgcctcagcctgag
ccgcagcccgaccccgcgccgcagccggtcgaggccgaggcacccgctgccgaaaccgct
cctgagccagtggccgaaaaggtcgaagagcagcccgccgagaagcccaaacccaaacgg
cgcggctggtggtcgctgggcagctaa
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