Streptomyces fradiae: CP974_09435
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Entry
CP974_09435 CDS
T07648
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sfb
Streptomyces fradiae
Pathway
sfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP974_09435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfb03019
]
CP974_09435
03009 Ribosome biogenesis [BR:
sfb03009
]
CP974_09435
Enzymes [BR:
sfb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CP974_09435
Messenger RNA biogenesis [BR:
sfb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CP974_09435
Ribosome biogenesis [BR:
sfb03009
]
Prokaryotic type
rRNA processing factors
CP974_09435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QEV12208
LinkDB
All DBs
Position
complement(2096251..2100732)
Genome browser
AA seq
1493 aa
AA seq
DB search
MLEPNETGNAGVNEDNNSPSDTLPPRRRRRAASRPAGPPAAADTSAEAAETVLATAAPAA
APDAPAAPEAGDTTEAAAPARPRRRATRKATAPAVEAPQAVEAPEAAPAAEAAAPAAPVE
EPAAPARPRRRATRKATAPVTSPEPQAPAAEAAPAEAPQAAEAPEAAAPAEAAAPAEEPA
APARTRRRATRKATAPAPVEEAPAVAEAPQAVEVPEAAVPAVEAAAPAEAPAPVEEPAAP
ARPRRRATRKATAPAPVEEPQAAEAPQVVEEPQAAEAPQAAAPVEAAAAPAEEPAAPART
RRRATRKATAPAPAEEPRAAEPEAEEAGGGESLPAATVARISADESGQVAAAEQAATRGR
GRRRVSTPQFTAEPERAPERGRRPSRPAVPVFQAPVFAEPMFQTPETAAAAAAAEAREAT
AEVEAEEELPETAEAAAPAVEPAAERAETGGRRRRRRRGEPAETAPAAAAQAPAPEAAPL
AEETAEEEAEQAAETDEQDEFEERPSRRRRRGGRRRRRGESADAEDHDESADAEGAEQGG
EDESEGDEHEEEGEEGEEDATPSAAGTSSSRRRRRRRRRSGEPAADAEAPAEEDGVRTVV
KVREPRPPRDKGEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAV
ERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIG
KGRNAVLYAGEVNFEALGMAHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPG
RYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVER
LQAQWEEIQRKAKTGNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVSH
VAPDLADRLQRWTSEVDVFATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTG
KFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLEC
LGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPATSGGGG
GGKKSRKRGRGGAEQPAEHAEHTHEYAHEPAEAEAGRPAEAPAPVAARRAEAPAPAAEPQ
QAFAPDEELYSSAAEAEAAASRGRTRRRAGRRASAPAGAPRTAEAAPVAQAPVPPVAEPV
TAAEPEPAAPVAAPVTAPEPVAQAAPEAPAAEEAAAPVEPAAPQGRTRRRATRKATAPAG
SPSGAEAAVLVAPAPEAPAATEAPAAESAAEAPPVTAEPAAEAPAPVAAPPRARRRVVRK
VTAPAGSPSGAEEAAIVVVAAAPAAEQPAPEPEAPAAEATEPEAEVAPAAEEAEVAPAAE
EAEEAPAAEEAEEAPAAEVAESEAAEKPARKTAAKKATAKKTAAKKTAAKKTAAKKTTTA
KKATATKAASKTAGTAKTAKTAKTAKTAKTAATRKTAAAEQPSAPSVTAVTED
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagccgaacgagaccggcaacgccggtgtcaacgaggacaacaacagccccagc
gacacgctgccgccgcgccgcaggcgccgcgccgcgtcgcgccccgccggcccgccggcc
gccgcggacacctccgcggaggccgccgagaccgtgctggccaccgcggcgcccgccgcc
gcgcccgacgcgcccgccgccccggaggcgggggacacgaccgaggccgccgctccggcg
cgcccgcgccgccgcgccacccgcaaggccaccgcgcccgcggtggaggctccgcaggcc
gtcgaggcgcctgaggccgctccggccgccgaggccgccgcgcccgccgctcccgtcgag
gagccggccgctcccgcccgtccgcgtcgccgcgcgacccgcaaggcgaccgccccggtg
acgtcgccggagccgcaggccccggccgcggaggccgccccggcggaggccccgcaggcc
gccgaggcgcctgaggccgccgctcccgccgaggccgccgcgcccgccgaggagcccgcc
gcccccgcccgcacccgccgccgcgccacgcgcaaggcgaccgctccggcgcccgtcgag
gaggcgcccgccgtggcggaggccccgcaggccgtcgaggttcctgaggcggccgttccg
gccgtcgaggccgccgctcccgccgaggcccccgcgccggtcgaggagccggccgccccg
gcccgtccgcgtcgccgcgccacccgcaaggcgaccgccccggcacccgtcgaggagccg
caggccgcggaggccccgcaggtcgtcgaggagccgcaggccgcggaggctccgcaggcc
gccgcgcccgtcgaggccgccgccgcgcccgccgaggagcccgccgcccccgcccgcacc
cgccgccgcgccacgcgcaaggcgacggcgcccgccccggccgaggagccgcgggccgcc
gagcccgaggccgaggaggccggcggtggcgaaagcctgcccgccgccaccgtggcgcgc
atcagcgccgacgagtccggccaggtcgccgccgccgagcaggccgccacccggggccgc
ggacgccgccgtgtcagcaccccgcagttcaccgccgagccggagcgcgcccccgagcgc
ggacgccgcccgtcgcgccccgccgtgccggtcttccaggccccggtcttcgccgagccg
atgttccagacgccggagaccgccgccgcggccgccgcggccgaggcccgcgaggccacc
gccgaggtggaggcggaggaggagctccccgagaccgccgaggccgccgcccccgccgtc
gagcccgcggcggagcgtgccgagaccggaggccgccgtcgccgccgccgtcggggcgag
cccgccgagaccgcccccgcggccgccgcgcaggccccggcccccgaggccgcgcccctc
gcggaggagaccgccgaggaggaggccgagcaggccgccgagaccgacgagcaggacgag
ttcgaggagcgcccgtcgcggcgccgccgccgcggtggccgtcgccgccgccggggcgag
tcggccgacgccgaggaccacgacgagtccgccgacgccgagggcgccgagcagggcggc
gaggacgagtccgagggcgacgagcacgaggaggagggcgaggaaggcgaggaggacgcc
accccgtccgccgccggcacgagcagctcccgccgtcgccgccgtcgccgccgccgcagc
ggggagccggccgccgacgcggaggcgcccgccgaggaggacggcgtccgcacggtcgtg
aaggtgcgcgagccgcgcccgccgcgggacaagggcgagccgtccgacgaggtgcagtcc
atcaagggctccacccgcctggaggccaagaagcagcgccgccgcgagggccgcgagcag
ggccgccgccgcgtcccgatcatcaccgaggccgagttcctggcccgccgcgaggcggtc
gagcgcgtcatggtcgtccgccagagcggcgagcgcacccagatcggcgtcctcgaggac
aacgtgctcgtcgagcactacgtcaacaaggagcaggccacctcgtacgtcggcaacgtc
tatctgggcaaggtccagaacgtgctgccgtccatggaggccgccttcgtcgacatcggc
aagggccgcaacgccgtcctgtacgcgggcgaggtcaacttcgaggcgctcggcatggcc
cacgggccgcgccgcatcgagaccgccctcaagtccggccagtccgtcctcgtccaggtg
acgaaggacccgatcggccacaagggcgcccgcctcaccagccaggtctccctgcccggc
cggtacctggtctacgtgcccgagggctccatgaccggcatcagccgcaagctgcccgac
accgagcgggcccggctgaagaccatcctcaagaagatcgtccccgaggacgccggcgtc
atcgtgcgcacggccgccgagggcgcgagcgaggacgagctgcgccgcgacgtcgagcgg
ctccaggcgcagtgggaggagatccagcgcaaggcgaagacgggcaacgccccgacgctc
ctgtacggcgagccggacatgaccgtccgcgtcgtccgcgacatcttcaacgaggacttc
tccaaggtcatcgtcagcggtgacgaggcgtgggagacgatccacggctacgtgtcgcac
gtcgcgcccgacctggcggaccggctgcagcgctggacctccgaggtcgacgtcttcgcg
acgtaccggatcgacgagcagctgatgaaggcgctcgaccgcaaggtgtggctgccgtcc
ggcggctcgctggtgatcgacaagaccgaggcgatgatcgtcgtcgacgtcaacaccggc
aagttcaccggccagggcggcaacctggaggagacggtcaccaggaacaacctggaggcg
gccgaggagatcgtccgccagctgcgcctgcgcgacctgggcggcatcgtcgtcatcgac
ttcatcgacatggtgctggagtccaaccgggacctggtgctgcggcgcctgctggagtgc
ctgggccgggaccgtacgaagcaccaggtcgccgaggtcacgtcgctgggcctggtccag
atgacccgcaagcgggtcggccagggcctgctggagtccttctccgagacctgcgtccac
tgcaacggccgcggtgtcatcgtgcacatggagcagcccgccacctcgggcggcggcggt
ggtgggaagaagtcccgcaagcgcggccgcggcggcgccgagcagccggccgagcacgcc
gagcacacccacgagtacgcgcacgagccggccgaggccgaggccgggcggcccgcggag
gcgcccgcccccgtggcggcccgccgcgccgaggcgcccgccccggccgccgagccgcag
caggcgttcgccccggacgaggagctgtactccagcgccgccgaggccgaggccgccgcg
tcccgcggccgtacccgccgcagggccgggcgcagggcgtccgcccccgccggtgcgccg
cgcaccgccgaggccgcgccggtggcgcaggccccggtgcccccggtcgccgagccggtc
accgccgcggagccggagccggccgccccggtcgccgcgccggtcaccgccccggagccg
gtcgcacaggccgcccccgaggcgcccgccgccgaggaggccgcggcgcccgtcgagccg
gccgcgccgcagggccgtacgcgccgccgcgccacccgcaaggcgacggcgccggccggt
tcgccgtcgggcgccgaggccgccgtcctcgtggcccccgccccggaggccccggccgcc
accgaggccccggccgccgagtccgccgccgaggcgccgccggtgaccgccgagcccgcc
gccgaggcgcccgcccccgtggcggccccgccgagggcgcgccgccgggtggtccgcaag
gtcaccgctcccgccggttcgccgtcgggcgccgaggaggccgcgatcgtcgtcgtggcc
gccgccccggcggcggagcagccggcccccgagccggaggcccccgccgcggaggcgacc
gagccggaggccgaggtggcccccgcggccgaggaggccgaggtggcccccgcggccgag
gaggccgaggaggcccccgcggccgaggaggccgaggaggcccccgcggccgaggtggcc
gaatcggaggccgccgagaagccggcgcgcaagaccgcggccaagaaggcgacggccaag
aagaccgccgcgaagaagacggcggccaagaagaccgccgcgaagaagacgacgaccgcc
aagaaggccacggccaccaaggcggcgtcgaagacggccggcacggcgaagacggcgaag
accgccaagacggccaagacggccaagacggcggccaccaggaagaccgccgcggccgag
cagccgtccgccccctccgtgacggcggtcacggaggactga
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