Streptomyces fradiae: CP974_17385
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Entry
CP974_17385 CDS
T07648
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sfb
Streptomyces fradiae
Brite
KEGG Orthology (KO) [BR:
sfb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfb03016
]
CP974_17385
Enzymes [BR:
sfb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CP974_17385
Transfer RNA biogenesis [BR:
sfb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CP974_17385
Prokaryotic type
tRNA splicing ligases
CP974_17385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QEV13466
LinkDB
All DBs
Position
3873464..3874657
Genome browser
AA seq
397 aa
AA seq
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MAYVEVPGEKVPIRMWADPATVEGAALQQLRNTATLPWIEGLAVMPDVHFGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVRTSLTAGDLPDDLSGLRARIERAIPVGRGMHDEMVDPD
RLAGFAAAGWDDLWARFGGVAEAVRFRQERATKQMGTLGSGNHFVEVCLDSTGSVWLMLH
SGSRNIGKELAEHHIGVARALPHNQDLIDRDLAVFVAGTDEMAAYRNDLFWAQEYAKYNR
SVMMALLKGVVAAEFEKAGVTFEREISCHHNYVAEERYDGKDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNEKSFNSASHGAGRRMSRNAAKRRFTTRDLEEQTRGVECRKDSG
VVDEIPSAYKPIEKVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacgtcgaggtgccgggcgagaaggtgcccatccggatgtgggcggacccggcc
acggtggagggcgccgccctccagcagctgcggaacaccgcgaccctgccgtggatcgag
gggctcgccgtcatgccggacgtccacttcggcaagggggcgacggtcgggtccgtcatc
gccatgcgcggcgccgtctgcccggcggcggtcggcgtcgacatcggctgcggcatgtcg
gccgtgcggacctcgctgaccgccggcgacctgccggacgacctgtcggggctacgcgcg
cgcatcgagcgggccatcccggtgggccggggcatgcacgacgagatggtcgacccggac
cggctcgcgggcttcgcggcggccgggtgggacgacctgtgggcgcggttcggcggtgtc
gccgaggcggtcaggttccgtcaggaacgcgccacgaagcagatgggaacgctcggaagc
ggtaaccacttcgtcgaggtctgcctggactcgaccggttcggtgtggctgatgctgcac
tccggttcgcggaacatcggcaaggagctggccgagcaccacatcggcgtcgcccgcgcg
ctcccgcacaaccaggacctgatcgaccgggacctcgccgtcttcgtcgccggcaccgac
gagatggccgcctaccgcaacgacctcttctgggcgcaggagtacgcgaagtacaaccgc
tccgtcatgatggcgctcctcaagggcgtggtcgccgcggagttcgagaaggccggcgtg
accttcgagcgggagatctcctgccaccacaactacgtggcggaggagcggtacgacggc
aaggacctgctcgtcacgcgcaagggcgcgatccgcgcgggcagcggcgagtacggcatc
atccccggctccatgggcaccggctcgtacatcgtgaagggcctcggcaacgagaagtcc
ttcaactccgcctcgcacggcgccggccggcgtatgagccgcaacgccgccaagcggcgc
ttcaccacgcgggacctggaggagcagacgcgcggggtggagtgccgcaaggactcgggc
gtcgtggacgagatccccagcgcgtacaagccgatcgagaaggtcatcgaccagcagcgc
gacctcgtggaggtcgtcgccaagctgaagcaggtcgtctgcgtgaaggggtga
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