Spirochaeta africana: Spiaf_1721
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Entry
Spiaf_1721 CDS
T01811
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sfc
Spirochaeta africana
Pathway
sfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spiaf_1721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfc03019
]
Spiaf_1721
Enzymes [BR:
sfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Spiaf_1721
Messenger RNA biogenesis [BR:
sfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Spiaf_1721
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Flav_NS3-hel_C
Motif
Other DBs
NCBI-ProteinID:
AFG37778
UniProt:
H9UJT5
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All DBs
Position
complement(1953045..1954706)
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AA seq
553 aa
AA seq
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MLFTELDLHEEVLSGIETAGFEECTEVQERAIPPAMQGRDLKVQSQTGSGKTAAFLLPVF
HRYVTGQIVPEHKTLVIAPTRELADQIYQEAKLLGSSTRLRFAVCYGGVGYHKQEKELND
DPQVIIGTPGRLMDHAKSGRIKFEQFGVLIIDEADRMFDMGFYPDVRWMVSRMPGTDVRQ
TMLFSATLSVKVMNLAWEYMREPVEITVAAEQITVETIKQAVYHVSKKEKIPFLFGLLER
EKPKSCIIFTNTKRGAEEVSRRLSRKGYTSEFIMGDLPQSKRSAIIKRVKRGDLPVLVAT
DVAARGLHVDDLEMVINFDVPEDPENYVHRIGRTARAGKSGRAFMLACERFVLGLPAIED
YIKQKIPVEPVSEDMLIADSGHSGQERDSRRGGARSSDSRGGGRARRDHGERRGGTGRNA
RDSRPPEVSRSENGARAGEQSAAKPAAGASRKPAAVGTDKQGRVKDTARAQKPAGSKPDS
RGDRGRKRREPPKAAAAPTAASSEAERLAYYRSKYGEDFVLKEKVSGDEIASVGKKRSSR
KGVRTLLDRLLGR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttacagaacttgacctccatgaagaggtgttaagcggtatcgagaccgcagga
tttgaagaatgcaccgaggtgcaggagcgcgctattccgcctgcaatgcaggggcgcgat
ttgaaggtacagagccagaccgggtccggcaagaccgcagcctttctgctgccggtattc
catcggtacgtgaccggccagattgtccctgaacacaagaccctggtgattgctcctacc
cgcgagcttgctgatcagatctaccaggaagcaaagcttctcggatcttcgaccaggctc
agatttgccgtctgctacggtggcgtcgggtatcacaagcaggaaaaggaactgaacgat
gatccgcaggtgattatcggtacacccgggcgcctgatggatcatgcaaagtcgggaaga
atcaagttcgagcagttcggggtactgattatagatgaagccgaccggatgtttgacatg
ggattctatccggatgtccggtggatggtgtctcgtatgccagggaccgatgtgcgtcag
actatgctgttcagtgcaaccctgagtgtcaaagtcatgaaccttgcctgggagtatatg
cgcgagccggtggaaataactgtcgctgcagagcagatcactgtcgagactatcaagcag
gcggtatatcatgtcagcaagaaggaaaagatccccttcctgttcggtctgttggagcgg
gaaaagcccaaaagctgcattatcttcaccaataccaaacgaggtgccgaagaggtttcc
cgtcggttgagccgcaaggggtacacctcggaatttattatgggggaccttccccagagc
aagcgttcggcaatcatcaagcgggtaaagcgtggcgatcttcctgtcctggtagcgacc
gatgtcgccgcgcggggactgcatgtcgatgacctggagatggttatcaatttcgatgtg
cccgaggatccggaaaactacgtgcaccgcattggccgaacggcgagagccggtaaatct
ggccgggcgtttatgctggcctgtgagcgtttcgtactggggctgccggcaatcgaggac
tatatcaagcagaagattcctgtcgagccggtcagcgaggatatgctgattgccgacagc
ggtcattccggtcaggagcgggactccagacggggaggcgcgcgatcatccgattcccgg
gggggcggccgtgcgcgtcgtgaccatggcgagcgtcgcggtggtacgggacgcaatgcc
agggacagtcgcccgccggaagtaagccgttcagaaaacggcgcccgggctggtgagcaa
tcagccgctaagccagccgcaggtgccagtcgtaaaccggcagcagtcggcaccgacaag
cagggccgggtcaaagacactgcccgtgcacagaagccggcaggcagcaagccggattct
cgcggtgaccgtgggcgtaaacggcgcgagccgcccaaagctgctgctgcacctacggct
gcgtcgagtgaggccgaacgactggcatactatcgaagcaagtacggtgaggattttgtt
cttaaggaaaaggtatccggcgatgagatcgcatccgtcgggaagaagcgcagctcgcgc
aagggcgtgcgcacattactggacagactgctgggacgttaa
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