Spirochaeta africana: Spiaf_1888
Help
Entry
Spiaf_1888 CDS
T01811
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sfc
Spirochaeta africana
Pathway
sfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spiaf_1888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfc03019
]
Spiaf_1888
03400 DNA repair and recombination proteins [BR:
sfc03400
]
Spiaf_1888
Enzymes [BR:
sfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spiaf_1888
Messenger RNA biogenesis [BR:
sfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Spiaf_1888
DNA repair and recombination proteins [BR:
sfc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Spiaf_1888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
HHH
Motif
Other DBs
NCBI-ProteinID:
AFG37942
UniProt:
H9UK99
LinkDB
All DBs
Position
complement(2153423..2155399)
Genome browser
AA seq
658 aa
AA seq
DB search
MQEAYAILEKIYGYEDFRLQQREVIAALLAGRDAFVLMPTGGGKSLCYQIPAMVRPGIGV
VVSPLIALMQDQVAALRQNGVRAAFLNSSLQAAEARRVEQELLRGELDLLYLAPERLFSE
RMLGLLDELAAGAGSAGSSAAAGDAGPSGVAGGAGVSGAAVATGTPGIALFAIDEAHCVS
QWGHDFRPEYRRLSLLAERFPQVPRLALTATADQRTRAEIVEQLQLAQADTFITSFDRPN
IRYSITEGGEARQRLWAFLLQNHPQDAGIVYCLSRKKVEQTAEWLSARGRVALPYHAGLD
AETRRMHQERFLREDGVIIVATIAFGMGIDKPDVRFVAHLSLPKSIEAYYQETGRAGRDG
EPASAWMAYGLQEAITLRRMMADSGASEQQQRVERQKLDAMLALCEGNGCRRQALLEYLG
EPGHPPCGNCDSCLDPAPTWDATEAAQKALSCVYRTGQRFGVSYVIDVLLGKDSDSRVAR
YGHDRLSTFGIGGELAAPAWRVLFRQLIALGYLTVDVENHGSLLLTEAARPLLRGEVSLQ
LRQAAVNGRAGRRRGVTGAGGGIGGSHQAGSGAATADNAPQYSEADEQLWQVLRGWRLQL
AREQGVPSYVILHDRTLRELVRQRPCSLSELAAVTGIGESKLERYGRDLLDVIGGNDD
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaagcctatgcaattctggaaaaaatttacggctatgaggattttcgcctgcag
cagcgcgaggtgattgcagcgctgctggcggggcgggatgcctttgtgctgatgccgacc
ggcgggggcaagtcgctgtgttatcagataccggcgatggtgcggccgggtatcggggtg
gtggtgtcgccgttgattgccctgatgcaggatcaggtggcggcgctgcggcagaacggg
gtgcgggcggcgtttctgaactcgagcctgcaggcggccgaggcgcggcgggtcgagcag
gagctgctgcggggagagctggatctgctgtatctggccccggagcggctgttcagcgag
cgtatgctggggctgctggatgagctggctgctggtgccggatcagctgggtccagcgca
gcggctggtgatgccggaccgagcggggtggccggtggtgccggtgtgtcaggcgcagct
gtggcgactgggacccccgggatcgccctgtttgcgatcgatgaggcgcactgtgtctcc
cagtgggggcatgatttccgcccggagtaccggcggctgtcgcttttggccgagcggttc
ccgcaggtgccgcggctggcgcttacggctactgccgaccagcgcacccgggccgagatt
gtggagcagctgcagctggctcaggctgatacctttatcactagttttgaccggccgaat
atccgttacagcattaccgagggcggggaggcgcgtcagcggttgtgggcttttctgctg
cagaatcatccgcaggatgccgggatcgtgtactgtctgtcgcgcaagaaggtcgagcag
accgccgagtggctcagtgcgcgtgggcgggtggccctgccgtatcatgccgggctggat
gcggagacccgtcgaatgcatcaggagcggttcctgcgcgaggacggggtaataatcgtg
gcgaccatcgccttcgggatggggatcgacaagccggatgtccggtttgtggcgcacctg
agcttgccgaaaagcatcgaggcctactaccaggagaccggacgggcggggcgcgacggt
gagccggccagcgcctggatggcctacgggctgcaggaggcgattaccctgcggcggatg
atggccgattcgggggcgagcgagcagcagcagcgggtggagcggcagaaactggatgca
atgctggcgctgtgcgagggcaatggctgccggcgtcaggccctgctggagtatctggga
gagccggggcacccgccctgcggcaactgtgacagctgcctggatccggcgcccacctgg
gatgctaccgaggcggcgcagaaggcgctgtcgtgtgtgtaccgtaccgggcagcggttc
ggggtgagttatgtgatcgatgtgctgctgggtaaggacagcgattcgcgggtggcccgc
tacgggcatgaccggctgtctaccttcgggatcgggggcgagctggcggcgccggcctgg
cgggtgttgttccggcagctgatcgcgctggggtacctgacggtggatgtcgagaatcat
ggttcgctgctgctgaccgaggcagcgcggccactgctgcggggcgaggtgtcgctgcag
ctgaggcaggcggcggtgaacgggcgtgccggtcggcggcgcggtgtgacgggcgccggt
ggtggtatcgggggatctcaccaggcgggcagcggtgctgccaccgctgacaacgcaccg
caatacagcgaggctgatgagcagctgtggcaggtgctgcgcgggtggcgcctgcagctg
gcgcgcgagcagggggtgccatcctacgtgatcctgcatgatcgtaccctgcgcgagctg
gtgcggcaacgcccgtgctccttgtccgaactggctgcggtcaccgggatcggcgagtcc
aagctggagcgctacgggcgagatctgctggatgtaatcggaggtaatgatgactga
DBGET
integrated database retrieval system
