Spirochaeta africana: Spiaf_1976
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Entry
Spiaf_1976 CDS
T01811
Name
(GenBank) hypothetical protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sfc
Spirochaeta africana
Pathway
sfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spiaf_1976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfc03019
]
Spiaf_1976
Messenger RNA biogenesis [BR:
sfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Spiaf_1976
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
UPF0242
Cas3_HD
dUTPase
Motif
Other DBs
NCBI-ProteinID:
AFG38027
UniProt:
H9UKI4
LinkDB
All DBs
Position
complement(2256896..2258425)
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AA seq
509 aa
AA seq
DB search
MEIIGMILLPFGGVLLGWLVRWLYAKFQLSSLEQRAERLKQEAVKEAESIKNQLLLETKD
ELIEERNQQEKEFRERRGELQRFERRLLQKEENLEAKIEQVERRQQSFTDREKALQDKEQ
SLHQVEENLRNELERVSGLTIDEAKSLIIKSLEDDARHEAQGMINKIEAEARMTADKQSR
DILVTTIQRLASEVNAEVTVTSVSLPNDEMKGRIIGREGRNIRTLETLTGVDIIIDDTPE
AVVVSCFDPVRKEIARQALERLVSDGRIHPTRIEEVVHKVTHEISQSIFEEGEKALFDLG
VHHMKPEGIRGLGRLKFRTSYGQNVLAHSKEVAILSGMLAAEVGADREIAVRAGLLHDIG
KGIECDEDSNHVELGVELAKRIGEDERVINAIAAHHGDVPHSCIESVIVQVADALSASRP
GARRETLDNYIKRLENLEKIAEDFDGVDKAYAIQAGRELRIMVDHEKVTDMQAREVAKQI
ARKIEEQLRYPGRIKVTMIRETRIVEYAR
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcattggcatgattctccttcctttcggcggtgtacttctaggttggctggtt
cgttggctgtatgccaagtttcagctctcatcgctcgagcagcgagcggagagacttaaa
caggaagcagtaaaagaagcggaatcaataaaaaatcagcttctgttggaaacaaaagat
gagcttattgaagaacggaaccaacaggaaaaagagtttcgcgaacgccggggggaactc
cagcggttcgagcgcaggctccttcagaaggaagaaaacctagaagcaaagattgagcag
gtagaacgccggcagcaatcattcaccgaccgtgagaaggcgttacaggataaggaacag
agtttacaccaggtagaagaaaatctccgcaacgagctggaacgggtatccgggcttacg
attgatgaggccaagtcgctgatcatcaagtcgctggaggatgatgctcggcatgaagcc
caggggatgataaacaagatcgaggccgaggctcgcatgactgccgacaagcagtcgcgt
gatatcctggttaccaccatccagcgactcgccagcgaggtgaacgctgaggtgacggtg
acctcggtaagtctccctaacgacgagatgaagggacggattattggccgtgagggtcgg
aatatccgcaccctcgagaccctgaccggtgttgacattattatcgacgataccccggag
gcagtcgtggtgtcgtgcttcgatccggttcgcaaggagattgcccgccaggcactcgaa
cgactggtgtcggatggcagaattcaccccacgcgcatcgaagaagtggtgcacaaggtg
acgcacgagatctcgcaaagtatcttcgaggaaggtgagaaggccctgttcgatctgggt
gttcaccatatgaagccggagggaattcgcggtctggggcggctcaagttccgtaccagc
tacggccagaatgtgttggctcacagcaaagaggttgccatcctgtccggcatgctggcg
gccgaggtaggtgctgaccgtgagattgcggtgcgagccggcctgctgcatgatatcggc
aaagggatcgagtgcgacgaggacagtaatcacgtagagctcggggtagagctggccaag
cggataggcgaggatgaacgggtaattaacgctattgcagcccatcatggagatgtaccg
cacagttgtatcgagtcggtgatcgtgcaggtagcggatgccttgtcggcctcgcgcccc
ggagcgcgccgggaaaccctggacaactacatcaagcgcctggagaacctggagaagatc
gccgaggattttgacggcgttgataaggcttatgctattcaggccggacgtgaactgcgc
ataatggttgatcacgaaaaggtaaccgacatgcaggcgcgagaggttgccaagcagatc
gctcgcaagatcgaggagcagctgcggtatccgggccggatcaaggttaccatgattcga
gaaacccggattgtggagtatgcccgttga
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