Spirochaeta africana: Spiaf_2135
Help
Entry
Spiaf_2135 CDS
T01811
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sfc
Spirochaeta africana
Pathway
sfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spiaf_2135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfc03019
]
Spiaf_2135
Enzymes [BR:
sfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Spiaf_2135
Messenger RNA biogenesis [BR:
sfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Spiaf_2135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AFG38183
UniProt:
H9UKZ0
LinkDB
All DBs
Position
2418543..2420000
Genome browser
AA seq
485 aa
AA seq
DB search
MESLTFSQLELESTILDAVKRQGYTTPTPIQAQSIPVLMHGSDMLGTAQTGTGKTAAFVL
PLLDRLIKNPRQPETSANPAREPAHNRNGRNSRDSRRRPVKPARPEALILAPTRELAIQI
GDSLQKYGSGSGLKHTVIYGGAPKPSQAAKLRNNPDILAATPGRLMDFVGEGLIDLTGIR
VLILDEADRMLDMGFIPEMRKIAAMAEDRDQTVLFSATMPREIESLAQELLTNPERVAIA
PQEVTVDRITQTVLHLDREDKTKLLPALIRDHNMFRVIIFTRTKHRATRVAKLLSKAEIP
ADAIHGDRTQGQRQRALEGFRRGKIQALVATDVASRGIDVDDVSHVINFEIPNEAESYVH
RIGRTGRAGTEGIAIALCARDEIKDLRAIERLLGSPIVVNRDHEFHQEPPRSQGRSGNTS
GGGGRQKSRNRFNDSRPGRNKSGDNRQRRSGNDSFGGTNRTTGGRPGGGTGNSRGRTRAA
RSFSS
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggaatctctcactttctcccagcttgagctggagagtactattcttgatgctgttaag
cgtcagggctacaccacccccacgccaatccaggcgcaatccatcccggtattgatgcat
ggcagcgacatgctgggcactgcacagaccggcaccggtaaaaccgcagccttcgtgctg
ccgctactcgaccgcctgatcaaaaacccccgtcaaccggaaacctcggcaaacccggct
cgtgagccggcgcacaaccggaatggacgcaacagtcgcgatagtcgacgtcgcccggtc
aaaccggctcgtcccgaggcactgattctggcaccaaccagagaactggctattcagatt
ggcgacagcctgcaaaaatatggcagcggcagcggcctgaaacataccgtaatttacggt
ggcgcccccaagccgagtcaggcagcaaaacttcgcaacaatccggatattctggcagct
accccgggccgacttatggactttgttggagaaggcctgatcgaccttaccggtattcgc
gttcttatcctggatgaagccgaccgaatgctggacatgggattcattcccgagatgcgc
aagatcgccgcgatggcagaggatcgtgaccagaccgtacttttctcggctaccatgccg
cgcgaaatcgagtcactcgcccaggaattgctcaccaatccggagcgggtggcaatagcc
ccccaggaagtcacggttgatcgaattactcagaccgttctgcatcttgatcgtgaggac
aaaacgaaactgcttccagcattgatccgcgaccacaacatgttccgggtaataatcttt
acgcggaccaaacaccgcgctacccgggtcgccaagctgcttagcaaggctgaaatcccg
gcggatgccatccatggcgaccgcacacaaggccagcgtcagcgtgcgctggaaggattt
cgtcgcggcaagatccaggcactggtagccaccgatgttgcgtcccggggaatcgatgtg
gatgacgtatcccatgtaatcaatttcgaaatccccaacgaagcagaatcctatgtacat
cgcatcgggcgtaccgggcgagcaggtaccgaagggattgcgattgcattgtgcgcccgg
gatgagatcaaggacctgcgcgccattgaacggctgcttggcagcccgattgtagtaaat
cgagatcacgagttccaccaggaaccaccacgcagtcaaggacgatccggcaatacatcg
ggtggcggtgggcgccagaagagccgcaaccggtttaatgatagtcgacctggccgcaac
aagtccggtgataacagacagcggcgctcgggaaatgattccttcggcggtacaaacagg
accaccggcggacgccccggcggcggtaccggcaactcacgcggccgaacccgtgccgcc
cgatccttctccagctga
DBGET
integrated database retrieval system
