Spirochaeta africana: Spiaf_2623
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Entry
Spiaf_2623 CDS
T01811
Name
(GenBank) HrpA-like helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sfc
Spirochaeta africana
Brite
KEGG Orthology (KO) [BR:
sfc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfc03019
]
Spiaf_2623
Enzymes [BR:
sfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Spiaf_2623
Messenger RNA biogenesis [BR:
sfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Spiaf_2623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
AAA_11
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AFG38649
UniProt:
H9UMA6
LinkDB
All DBs
Position
complement(3000530..3003244)
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AA seq
904 aa
AA seq
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MTRLPPYPVAAVRDELLETLPHYPVTVLQAPPGSGKSTLIPLYLAERGLPAVDGKPGKIL
VLQPRRAAVRAVAERLRSLAEGRWRIGWLTRDERDLPRDPHILVMTEGIFVRRLIDDPEA
ADTAIVILDEYHERSQQVDLSLVLARQAQGVFAPHLRLLVMSATLETSWFAAQGAPVLRA
EQSLYEVTEGYAPPRPGERVAAHAARVVRQELAAGSQPAPTAWPAPGMLVFLPGEGEIRQ
CCRLLSEQLPAGVEVLPLYGRQSPAEQRRALEPPAPGQVRIVVATNVAETSLTIPGIGCV
VDSGLRRRRIQDAARGIGRMVTDRISMASAVQRAGRAGRLGPGRVVRLWPETEQLAAFDP
PEIVAGDTDWLLLQLAVWGDARPEGYDWPDPPPPERAAAARRSLQGLGALDAAGRITPLG
QALQQLPVDVRLGAMVLRAAAAEQRTSGDKPRGADGVLARAAWLAALVEEGDPLSREAAG
QYGADLLARYRLCEQSAARAADDGSLGLRRGAAPRVSRESERLRRAVERLDPAVLRLVDS
GDPDDAGVAESPGMLLAAAFPDRVGRRTAYGGWRLAGGGEFSLRAGENGFGPQWLVAVEV
QRGARGGVINLAAGLSDDEAAALIRRRAESGERAYLEDGQVRARRVEMLGAIELEQTPLR
VSDLADPAATISALVRESGQQLPGWSRGARELQARILFLRGRQGGGAGCTGGAGAASGGG
EASGAGPAAGQPQSADLRAPASGDPVWPDVSDAALAAVADEWLPGFLPRRPGGDCLQRLD
MRAVLLSLLPWELQGRLDELAPESVLLPSGSRQRLRYEGDRCVLSARIQQLFGMMQGPRA
GGEPVEIELLSPARRPVQITRDLASFWRSTYAEVRKELRGRYPKHYWPEDPSQAEPTDRV
RPRG
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgacccgactgccgccttatccggtggctgcggtgcgcgacgagctgctggaaaccctg
ccgcattacccggtaaccgtgctgcaggccccgccgggcagcggcaagtcgaccctgatc
ccgctgtatctggccgagcgcgggctgccggcagtcgatggaaagccgggaaagatactg
gtgctgcagccgcgccgcgcggcggtacgggcagtggccgagcgactgcgcagccttgcc
gagggccgctggcgtatcggctggctgacccgcgacgagcgcgatctgccccgcgatccg
cacatcctggtaatgaccgaggggatctttgtgcgccgcctgatcgatgaccccgaggcg
gccgataccgctattgttatccttgacgaatatcatgagcgctcgcagcaggttgacctg
agcctggtgctggcccgccaggcccagggggtgtttgccccgcatctgcgtctgctggtg
atgtcggctaccctggagactagctggtttgccgctcagggggcgccggtgctgcgggcc
gagcagtccctctatgaggtaaccgagggctatgccccgccgcgacccggcgagcgggtt
gccgcgcatgctgcccgggtggtgcggcaggagttggccgccggcagccagccggcgcca
accgcgtggcccgcgccgggtatgctggtgtttctgccgggcgagggggagatccggcag
tgctgccggctgctgagcgaacagctgccggcaggggtcgaggtgctgccgttgtacggg
cgccagagcccggcggagcagcggcgggcgttggagcccccggccccggggcaggtgcgg
atagtggtggccacgaatgtagccgagaccagcctgaccatccccgggatcgggtgtgtg
gtcgacagcggtctgcggcggcgccggatccaggatgccgcccgcgggatcggccggatg
gtaaccgaccggatcagcatggcctcggccgtgcagcgcgccgggcgggccggacgcctg
ggcccgggacgggtggtgcggctgtggcccgagaccgagcagctggcggctttcgacccg
cccgagattgtcgccggagacaccgactggctgctgctgcagctggcggtctggggtgat
gcccgccccgagggctatgactggccggatccgccaccgcctgagcgggcggcagcggcc
cgtcgcagcctgcagggactgggcgcgctggatgctgccggcaggatcaccccgttgggg
caggccctgcagcagctgccggtggatgttcgcctgggggcgatggtactccgggcagcg
gctgccgaacagcgtacatccggggataagccccggggagcggacggggtgctggcccgg
gccgcctggcttgccgcgctggtagaggagggcgatccgctctcgcgcgaagcagcgggg
cagtacggggccgatcttctggcacggtaccgtctctgcgagcagagcgcagcgcgcgcc
gcggatgacggcagtctggggttgcgccgcggtgcggcgccccgagtcagccgcgagagc
gaacgcctgcggcgggcggttgagcggctggatcccgctgtgctgaggctggttgattcc
ggggatcccgatgatgccggtgttgcggaaagcccggggatgctgctggcggcggccttt
cccgaccgggtggggcggcggacggcgtacgggggctggcggctggccgggggcggcgag
ttttccctgcgtgcgggcgagaacgggttcgggccgcagtggctggtggcggtcgaggtg
cagcggggggcacgcggcggggtgatcaatctggcggccgggctcagcgacgacgaggcg
gcggccctgatccggcggcgggcggaatccggggagcgggcctatctggaggacgggcag
gtgcgggcgcgccgggtggagatgctgggggcgatcgagcttgagcagaccccgctgcgg
gtgtcggatctggccgatccggcggcaacgatttcagcgctggttcgcgagagcggacaa
cagctgccgggatggagccgcggcgcgcgcgagctgcaggcgcgcatcctgtttctgcgc
gggcggcagggcggtggagccggttgtaccggtggagccggggcggccagtggaggcggt
gaagccagtggtgccggcccggccgccgggcagccgcagagtgccgacctacgcgccccg
gcgtccggcgaccctgtttggccggatgtctcggatgcggccctggcagcggtggcagat
gagtggctgccggggttcctgccgcggcgcccgggcggggactgtctgcagcggctggat
atgcgtgcggtgctgctgagcctgctgccgtgggagctgcaggggcggctggatgagctg
gccccggagtcggtgctgctgcccagcggttcgcggcagcgcctgcgctacgagggggat
cgctgcgtgctttcggcgcggattcagcagctgttcgggatgatgcaggggccgcgtgcc
ggcggcgagccggtggagatcgagctgctgtccccggcacggcgcccggtgcagatcacc
cgcgacctggccagtttctggcgctcgacctacgccgaggtacgcaaggagctgcgtggt
cgctacccgaagcactactggcccgaggaccccagccaggccgagccgaccgaccgggtg
cggccgcgggggtag
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