Sinorhizobium fredii USDA 257: USDA257_c04330
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Entry
USDA257_c04330 CDS
T02188
Name
(GenBank) SNF2-like protein
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
sfd
Sinorhizobium fredii USDA 257
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfd03021
]
USDA257_c04330
Transcription machinery [BR:
sfd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
USDA257_c04330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
RapA_C
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
AFL49030
UniProt:
I3WZH4
LinkDB
All DBs
Position
470767..473991
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AA seq
1074 aa
AA seq
DB search
MLGYLVQHRLFGCCKVIGFDGRTVDIKFCDGGGRRFFSRSALEGGDFKRAKLHTGALAMG
PHGQCAIDALIDGDGEGPRHYRITYEDGLGATVSEVQLLPLPVRLSDSLPARLLQGRTDP
YATFSARHRLLVALARFNRQVGGLRALLASRIDLHPHQAFVAGTVILDPVRRYILADEVG
LGKTIEAGLIMHDLLSRRPHARILVLTPGPLTRQWLCEMHTSFGGQGFKLADLYPFESVD
LGRWSKVICSTNFALDGLDEDLLAVPWDLVVVDEVHHLLNARHLYDLVMQLSHSTRDLLL
LSAVPVRRRESELYRLLALLDPQTYGKDGTGEEAFLAIYQAQEPLGRRLNLLSHDLTDLE
SGEATSGDVIARLERLLSLPIVQNDEQLHALLAAAEADPERAGALAQEAHQTISDRYRVN
RRILRNRRERLISQDRLAAITRVPALLRYEPDQIEGEAVTAAEAMLAALAADTNLSPDIL
RPFSRILLQALVDPIATLEVLTAVRDAKAATVNSYGREMLNSVVGLGGERWRIQLDTVSA
GVKAHVDPGLLSSAVRLASNWRSSHTSSVRWEALVSLLRGEIAAGRKTLVFAGFPGVAQR
LAALLKNALGEKSVTEFRSDLEDMAKEENVGRFRAEANVSIMVSDESGGEGRNFQFAHSL
IHADLPWQPAVIEQRIGRLDRLGREVISSEVVSHILVSADTWEAGLYACYHDGLDLFGKS
VSGLEFALRHLQDEIIDAALTGGQDGMHDLTARLKAIAAEERVRDDSEALLDEASYHAAR
AERFVRTPSAESELALEAAFLDYFRVLSGGRGVSRHQSADGAEGVWCLRPDNVPYGEITI
IDKDATGETGKRVGTFRRKLAQQQRRVEFFTYGNPLFDAVVESVGQRLTGRTYAIACQAV
GATSFIGLELIIAAQPRLNASDISPSLLNLAEAIFGAQRRQLFVPLLPGQPVEGSRLAGM
LTSLSTKGGGPHWRDLTGDQVQQLVRRFDGDLSTCLNRAMEQLIPAARGVFAKALAEPLA
SERERIAFQRHQLIKGSDAAGAAEAVMLERYSALIDSWDVVIDGIGFLAVNVRC
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgcttggctacctagttcagcatcgcctgtttggctgctgtaaggtcatcggttttgat
ggacgcaccgttgacatcaagttctgcgatggcggcggcaggcgcttcttctcccgtagt
gcgctcgaaggcggtgacttcaagcgggcgaaactccatacgggggcgctggccatgggg
ccgcatggtcagtgcgcgatcgatgccctgatcgatggcgacggggagggaccgcgccat
tatcgcatcacctatgaagacggtctcggtgcgacggtgagtgaggtccaattgctgccg
ctgccggtgcgcctcagtgacagccttcccgcccgtctcctccagggacgaaccgaccct
tatgcgacgttttctgcccggcaccgactgctcgtagcgctcgcgcgtttcaaccggcaa
gtgggcgggttgcgcgctttgctggctagccgcattgaccttcacccgcatcaggcattc
gtcgcgggaaccgtcattctcgatccggtgcggcgctacatccttgccgacgaggtgggc
ctcggtaagaccattgaagctgggctcatcatgcatgatctcctttcacggcgcccccac
gcacgcattctcgtgctcacacccggcccgctgacccgccaatggctgtgtgaaatgcat
accagtttcggtgggcagggattcaagcttgccgatctttatccattcgaatctgtcgat
ttaggtcgctggtccaaagtaatatgctcgaccaattttgcgctcgacggtctcgatgag
gacctgctggcggttccttgggacctggtggtggttgacgaggtccatcatctgctcaac
gcgcgccacctctacgacctggtgatgcagctctcgcacagtacgcgtgaccttctgctg
cttagcgcagttccagttcgtcggcgcgagtccgagctctatcgccttctcgcgctcctc
gatccgcagacctatggcaaagacggcaccggcgaagaagcgttcctcgccatctaccag
gcgcaggaaccgctcgggcgccggctcaacctactatcacacgatctcactgacctagaa
agtggtgaggctacaagcggggatgtgatcgcgcgtcttgagcggctgttgtctctgccg
atcgttcaaaatgacgagcagcttcacgcgctgttggccgccgccgaagccgacccggaa
cgcgctggggcgctcgcgcaagaggcgcatcagacgatctctgatcgttaccgcgtcaat
cgtcgtatccttcgcaatcgccgtgaacgcctgatcagccaggatcgtttggcggcgatt
acccgcgtgccggcgctgctccgctacgagcccgatcagattgaaggcgaggcggtgact
gcggccgaggctatgcttgcggcgctggccgccgacaccaatttgtcgcctgacatcctg
cgtccgtttagccgcatcctcctgcaggcgctggtcgatcctatcgcgacactcgaggta
ttgaccgccgtgcgtgatgcaaaagcggcgacggtcaattcctacggccgcgagatgttg
aattcagtggttggcctgggtggtgagcgctggcgcatccaacttgacaccgtctccgcg
ggtgtaaaggcacatgtcgatcccggcctcctttcatccgccgtccgtctggcgtcaaac
tggcgctcctcgcacacgtcctcggtgcgctgggaagcgctcgtctcgctgttgcgcggc
gagatcgccgccggccggaagacgctggtgtttgcaggcttccctggagtcgcgcaaagg
ctcgctgccctcctcaaaaacgcgttgggcgagaaatccgtgaccgagttccgcagcgat
ctcgaggacatggccaaggaggaaaatgtcggacggttccgtgccgaagccaacgtgtcg
atcatggtcagcgatgaaagcggcggagaaggccgcaactttcagttcgcgcatagtctc
atccacgccgacctcccctggcagccggcggtaatcgagcagcgaatcggccgcctcgac
cgtctcggccgggaggttatctccagcgaggttgtctctcacattttagtcagcgctgac
acatgggaagctggcctttatgcatgctaccatgatggactcgacctgttcgggaagtcg
gttagcggtttagaattcgcgctacggcacctccaggacgagatcatagatgcggcgctc
accggtggtcaggacgggatgcatgacctcacggcccggctaaaagcgatcgctgcagaa
gaacgcgttcgagacgacagcgaagcgctactcgacgaagcctcgtatcacgctgcacgt
gccgaacgtttcgtccgcacgccgtcggctgaaagtgaactcgcgcttgaggctgccttt
ctcgactactttcgggtactgtcgggcggcaggggcgtgtcaaggcaccagagcgccgat
ggagccgaaggcgtatggtgtttgcgacccgataacgtcccatacggggaaattactatc
attgacaaggacgcgacgggcgaaaccggcaagcgcgtcggcaccttccggcgcaagctc
gcacaacagcagcgccgcgtcgaatttttcacctacggtaatccgctcttcgatgcagta
gtcgaatcagtaggccagcgcctgaccgggaggacctatgcgatcgcctgtcaggccgtg
ggcgcaactagctttatcgggcttgagctgatcatcgccgcccaaccccgcctcaacgcg
agcgacatctcaccaagtctcctgaacctcgcggaagcgatcttcggggcacagcggcgg
cagttgttcgtgccactgctcccaggccaaccagttgaaggatcgcggctggcaggcatg
ctgacttcattgtcgacgaagggtggagggccgcactggcgcgatctaactggagatcag
gtccagcagttggtccgacgtttcgacggcgatctgtcgacctgcctaaatcgcgcaatg
gagcagctgatccccgccgcacgcggggttttcgccaaggccttggccgagccgctggcc
tccgaacgcgaacgcatcgccttccaacgacaccagttgatcaagggttcagatgccgcc
ggcgcggccgaagcggttatgctagagcgctattccgcgcttatcgacagctgggatgtt
gtcatcgacgggatcggctttctcgccgtcaacgtgcggtgctga
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