| Entry |
|
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| Symbol |
ycbB1
|
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| Name |
(GenBank) putative L,D-transpeptidase YcbB
|
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| KO |
| K21470 | L,D-transpeptidase YcbB |
|
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| Organism |
sfd Sinorhizobium fredii USDA 257
|
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| Brite |
KEGG Orthology (KO) [BR:sfd00001]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:sfd01002]
USDA257_c09290 (ycbB1)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:sfd01011]
USDA257_c09290 (ycbB1)
Peptidases and inhibitors [BR:sfd01002]
Cysteine peptidases
Family C82
USDA257_c09290 (ycbB1)
Peptidoglycan biosynthesis and degradation proteins [BR:sfd01011]
Peptidoglycan biosynthesis and degradation
Transpeptidase
USDA257_c09290 (ycbB1)
|
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| SSDB |
|
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| Motif |
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| Other DBs |
|
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| LinkDB |
|
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| Position |
973508..974836
|
|---|
| AA seq |
442 aa
MSKKNGIDAFSRRAFLRSAATLGAAAWAGAASAQDALGELINSPRRGSWDDQFDAKASRT
ATAVLSNTPVFGPQTISHVQQAIFDYQQIVAGGGWPQVPQTGVRLELGVTDPSVQQLRQR
LMVSGDLPRSAGISSSFDSYVDGAIKRFQARHGLPADGVIGEYTFKALNVDAATRLAQLE
TNLVRLQSMSGDLGRRYVMVNIPAAYIEAVENGRVVLRHAAVVGKIDRQSPILNSKIYEV
ILNPYWTAPRSIVQKDIMPLMRKDPTYLERNAIRLFDGSGNEVSPETVDWNAEKAPNLMF
RQDPGKINAMSSTKINFHNEHAVYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSNWLLK
ETPGWSRQQIEATIKTGVNTPIKLAEEVPVYFTYVTAWSAKDRVVQFRDDIYQRDGAAEL
ALQTTTGVEQSPGPIDADALPQ |
|---|
| NT seq |
1329 nt +upstreamnt +downstreamnt
atgtcgaaaaagaacggaattgatgctttctcgcgccgcgcgtttctgcgctcggccgca
acgctcggtgccgccgcatgggcaggcgccgccagtgcccaggacgcactgggcgaactc
atcaattcgccgcgtcgcggctcctgggatgaccagttcgatgccaaggcctcgcgcacc
gcgacagcagttctttccaatacaccggttttcggccctcagacgatcagccatgtgcag
caggcaatcttcgattaccagcagatcgtcgccggcggcggctggccccaggttccgcag
accggtgtaaggctcgagcttggcgtcaccgatccctccgtccagcagctgcgtcagcgc
ctgatggtctccggcgacctgccgcggtccgccggtatttcctcttccttcgattcctac
gtcgacggcgcgatcaagcgcttccaggcccgccacggtctgccggcggacggcgtgatc
ggcgaatatacgttcaaggcactgaacgtcgacgccgcgacgcggctggcccaactcgag
accaaccttgtgcggcttcagtcgatgtcgggcgatctcggccgccgctatgtcatggtc
aacattcccgccgcctatatcgaggcggtagagaacggccgcgtcgtgttgcgtcatgcc
gctgtcgtcggcaagatcgaccgccagtcgccgatcctcaattcgaagatctacgaggtc
atcctcaatccctactggaccgcgccgcgctcgatcgtccagaaggacatcatgccgctg
atgcgcaaggacccgacctatctcgagcgcaacgccatccgcctcttcgacggaagcggc
aacgaagtgtcgcctgaaacggtcgactggaatgccgaaaaggcgccgaatctgatgttc
cggcaggatcccggcaagatcaacgccatgtcctcgacgaagatcaacttccacaatgag
catgcggtctacatgcacgacacgccgcagcaaggcctgttcaacaagctgatgcgcttc
gaatcgtcgggctgtgtgcgcgtgcagaacgtccgcgacctctcgaactggctgctcaag
gagacgcccggctggtcgcgccagcagatcgaggcgaccatcaagacgggcgtcaacacg
ccgatcaagcttgccgaagaggtgccggtctatttcacctacgtcaccgcctggtcggcg
aaggatcgcgtcgtccagttccgcgacgatatttatcagcgcgacggcgccgcggaactg
gccctgcagacgacgaccggagtcgagcaatcgcccggccccatcgacgccgacgccttg
ccgcaataa |
|---|
