Sinorhizobium fredii USDA 257: USDA257_c09290
Help
Entry
USDA257_c09290 CDS
T02188
Symbol
ycbB1
Name
(GenBank) putative L,D-transpeptidase YcbB
KO
K21470
L,D-transpeptidase YcbB
Organism
sfd
Sinorhizobium fredii USDA 257
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sfd01002
]
USDA257_c09290 (ycbB1)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sfd01011
]
USDA257_c09290 (ycbB1)
Peptidases and inhibitors [BR:
sfd01002
]
Cysteine peptidases
Family C82
USDA257_c09290 (ycbB1)
Peptidoglycan biosynthesis and degradation proteins [BR:
sfd01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
USDA257_c09290 (ycbB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
AFL49521
UniProt:
I3X0W5
LinkDB
All DBs
Position
973508..974836
Genome browser
AA seq
442 aa
AA seq
DB search
MSKKNGIDAFSRRAFLRSAATLGAAAWAGAASAQDALGELINSPRRGSWDDQFDAKASRT
ATAVLSNTPVFGPQTISHVQQAIFDYQQIVAGGGWPQVPQTGVRLELGVTDPSVQQLRQR
LMVSGDLPRSAGISSSFDSYVDGAIKRFQARHGLPADGVIGEYTFKALNVDAATRLAQLE
TNLVRLQSMSGDLGRRYVMVNIPAAYIEAVENGRVVLRHAAVVGKIDRQSPILNSKIYEV
ILNPYWTAPRSIVQKDIMPLMRKDPTYLERNAIRLFDGSGNEVSPETVDWNAEKAPNLMF
RQDPGKINAMSSTKINFHNEHAVYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSNWLLK
ETPGWSRQQIEATIKTGVNTPIKLAEEVPVYFTYVTAWSAKDRVVQFRDDIYQRDGAAEL
ALQTTTGVEQSPGPIDADALPQ
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaagaacggaattgatgctttctcgcgccgcgcgtttctgcgctcggccgca
acgctcggtgccgccgcatgggcaggcgccgccagtgcccaggacgcactgggcgaactc
atcaattcgccgcgtcgcggctcctgggatgaccagttcgatgccaaggcctcgcgcacc
gcgacagcagttctttccaatacaccggttttcggccctcagacgatcagccatgtgcag
caggcaatcttcgattaccagcagatcgtcgccggcggcggctggccccaggttccgcag
accggtgtaaggctcgagcttggcgtcaccgatccctccgtccagcagctgcgtcagcgc
ctgatggtctccggcgacctgccgcggtccgccggtatttcctcttccttcgattcctac
gtcgacggcgcgatcaagcgcttccaggcccgccacggtctgccggcggacggcgtgatc
ggcgaatatacgttcaaggcactgaacgtcgacgccgcgacgcggctggcccaactcgag
accaaccttgtgcggcttcagtcgatgtcgggcgatctcggccgccgctatgtcatggtc
aacattcccgccgcctatatcgaggcggtagagaacggccgcgtcgtgttgcgtcatgcc
gctgtcgtcggcaagatcgaccgccagtcgccgatcctcaattcgaagatctacgaggtc
atcctcaatccctactggaccgcgccgcgctcgatcgtccagaaggacatcatgccgctg
atgcgcaaggacccgacctatctcgagcgcaacgccatccgcctcttcgacggaagcggc
aacgaagtgtcgcctgaaacggtcgactggaatgccgaaaaggcgccgaatctgatgttc
cggcaggatcccggcaagatcaacgccatgtcctcgacgaagatcaacttccacaatgag
catgcggtctacatgcacgacacgccgcagcaaggcctgttcaacaagctgatgcgcttc
gaatcgtcgggctgtgtgcgcgtgcagaacgtccgcgacctctcgaactggctgctcaag
gagacgcccggctggtcgcgccagcagatcgaggcgaccatcaagacgggcgtcaacacg
ccgatcaagcttgccgaagaggtgccggtctatttcacctacgtcaccgcctggtcggcg
aaggatcgcgtcgtccagttccgcgacgatatttatcagcgcgacggcgccgcggaactg
gccctgcagacgacgaccggagtcgagcaatcgcccggccccatcgacgccgacgccttg
ccgcaataa
DBGET
integrated database retrieval system
