Sinorhizobium fredii USDA 257: USDA257_c16530
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Entry
USDA257_c16530 CDS
T02188
Symbol
groL5
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
USDA257_c16530 (groL5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfd03019
]
USDA257_c16530 (groL5)
03110 Chaperones and folding catalysts [BR:
sfd03110
]
USDA257_c16530 (groL5)
03029 Mitochondrial biogenesis [BR:
sfd03029
]
USDA257_c16530 (groL5)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfd04147
]
USDA257_c16530 (groL5)
Enzymes [BR:
sfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
USDA257_c16530 (groL5)
Messenger RNA biogenesis [BR:
sfd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
USDA257_c16530 (groL5)
Chaperones and folding catalysts [BR:
sfd03110
]
Heat shock proteins
HSP60 / Chaperonin
USDA257_c16530 (groL5)
Mitochondrial biogenesis [BR:
sfd03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
USDA257_c16530 (groL5)
Exosome [BR:
sfd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
USDA257_c16530 (groL5)
Exosomal proteins of other body fluids (saliva and urine)
USDA257_c16530 (groL5)
Exosomal proteins of breast cancer cells
USDA257_c16530 (groL5)
Exosomal proteins of colorectal cancer cells
USDA257_c16530 (groL5)
Exosomal proteins of bladder cancer cells
USDA257_c16530 (groL5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
FRP
Pho88
Motif
Other DBs
NCBI-ProteinID:
AFL50242
UniProt:
I3X2Y6
LinkDB
All DBs
Position
complement(1753372..1755000)
Genome browser
AA seq
542 aa
AA seq
DB search
MAAKELKFHSEAREKMLRGVDILANAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEV
ELEDKFENMGAQMVREVASKTSDIAGDGTTTATVLAQAIVKEGAKAVASGMNPMDLKRGI
DKAVEAIVEELKTNARKVTKNDEIAQVGTISANGDTEIGRFLAEAVEKVGNEGVITVEEA
KTAVTELEVVEGMQFDRGYLSPYFVTNQDKMRVELEEPYILIHEKKLSNLQALLPVLEAV
VQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTA
ISEDLGIKLENVTLNMLGRAKKVVVEKENTTVVDGAGSKSEIQGRVAQIKAQIEETTSDY
DREKLQERLAKLAGGVAVIRVGGSTEVEVKERKDRVDDAMHATRAAVEEGVLPGGGVALL
RAVKALDSVETENADQKHGIEIVRRAVEAPVRQIAENAGAEGSIIVGKLREKTEFGFGWN
AQTNEFGDLYDQGVIDPVKVVRTALQDSASVAGLLITTEAMVAEKPKKEAPLPPMPGGGM
DF
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaaggaactgaaattccattccgaagctcgagagaagatgctgcgcggcgtc
gatatcctcgccaatgccgtcaaggtgacgctcggccccaaggggcgaaatgtcgttatc
gacaagtcgttcggcgcacctcgcatcaccaaggacggcgtaaccgtcgccaaggaagtc
gagctggaggacaagttcgagaacatgggcgcccagatggtgcgggaggttgcctcgaag
accagtgacatcgctggggacggcaccaccaccgcgacagttctcgcccaggcgatcgtc
aaggaaggtgcgaaggccgtggcgtcgggcatgaatccgatggacctgaagcgcggcatc
gacaaggccgtcgaggccatcgtcgaggaattgaagacaaacgcgcgtaaagtcaccaaa
aacgacgagattgcccaggtaggaacgatctcggcgaatggcgacaccgagattggtcgt
ttcctcgccgaggcggtcgagaaggtcggcaatgaaggcgtcatcaccgtggaggaagcc
aagaccgcggtgacagagctggaagtcgtcgagggcatgcagttcgaccgcggctatctc
tcgccgtacttcgtcaccaaccaggacaagatgcgggttgaactcgaggaaccctatatc
ctgatccatgaaaagaagctctccaacctgcaggcgctgcttccggttctcgaagccgtg
gtccaatcgggcaagccgcttctgatcatcgccgaggatgtcgaaggcgaggcgctggcg
acgctcgtcgtcaacaaattgcgcggcggcctgaaggttgcagctgtcaaggctccgggt
ttcggtgaccgccgtaaggcgatgctggaggatatagcaatcctcaccggcggaaccgca
atctctgaagatctcggcatcaagctcgagaacgtgacgctcaatatgctgggccgcgcc
aagaaggtcgtcgtcgagaaggaaaacaccaccgtcgtcgacggtgcgggctcaaagagc
gagattcagggccgcgtcgctcagatcaaggcgcagatcgaggaaaccacgtcagactat
gatcgcgagaagctgcaggaacggctggccaagcttgctggcggcgttgccgtcatccgc
gtcggcggctcgaccgaggtcgaggtgaaggaacgcaaggaccgcgtcgacgacgccatg
catgccacgcgggcggcggtcgaggagggcgtgctgcccggcggcggtgtcgctttgctg
agagccgtcaaggcactggacagcgttgagaccgagaatgccgaccagaaacacggcatt
gagatcgtccgccgtgcagtcgaggcgccggtgcgccagatcgccgagaatgccggcgcc
gagggctcgatcatcgtcggcaagctgcgcgagaagaccgaatttggttttggttggaac
gctcagaccaacgagttcggcgatctttacgatcaaggggtaatcgatccggttaaggtt
gttcgtaccgcgttgcaggactcggcctcggtcgccggcctgctgattaccaccgaggcg
atggtcgccgagaagccgaagaaggaagcaccgcttccgccaatgccgggtggcgggatg
gacttctga
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