Sinorhizobium fredii USDA 257: USDA257_c24920
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Entry
USDA257_c24920 CDS
T02188
Name
(GenBank) exonuclease RNase T and DNA polymerase
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd03030
DNA replication
sfd03430
Mismatch repair
sfd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
USDA257_c24920
03430 Mismatch repair
USDA257_c24920
03440 Homologous recombination
USDA257_c24920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfd03032
]
USDA257_c24920
03400 DNA repair and recombination proteins [BR:
sfd03400
]
USDA257_c24920
Enzymes [BR:
sfd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
USDA257_c24920
DNA replication proteins [BR:
sfd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
USDA257_c24920
DNA repair and recombination proteins [BR:
sfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
USDA257_c24920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
ANTAR
Rv2179c-like
DUF7025
Motif
Other DBs
NCBI-ProteinID:
AFL51068
UniProt:
I3X5B2
LinkDB
All DBs
Position
2616819..2617790
Genome browser
AA seq
323 aa
AA seq
DB search
MSQLDMFSSSRQSGDDVVVRLRGPLKQRRRPFDNESMVRLLEESGSYRVLRKLVGRQIVD
IPRPGFPRIGVIVDTETTGLDHSTDEIIEIGAVAFTFDDEGHIGDVTGVYGGLQQPSVPI
PPEITRLTGITDEMVAGQMIDVGSLRALLDPADLVIAHNAGFDRPFCEAFSSMFSGKAWA
CSVKEVDWATRGFEGTRLGYLIGQSGYFHDGHRAVDDCFALLEVLAGAGGVTEPGAFAEL
LKTSQRSRVRIFAEHSPFDMKDHLKARGYRWSDGSDGRPKSWWIEIDEERLTAELAFLRS
EIYRWEEADPPVIRPTAFDRYKA
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaactggatatgttttcctcgtcgcgccagtcaggcgatgacgtcgttgtgagg
ctgcgaggacccttgaagcagcggcggaggccattcgataacgagagcatggtccggctt
ttggaggagagcggcagctatcgcgtcttgcgcaagcttgtcggccgccagatcgtcgat
ataccgcggccgggatttcctcgcatcggagtgatcgtcgacaccgagacgaccggcctc
gaccacagcacggacgagatcatcgaaatcggcgcagttgcgttcaccttcgacgacgag
ggccatatcggcgacgtcacgggcgtttacggcggcctgcagcagccatctgttccaatc
cctcctgaaatcacccgcctcaccggaatcaccgacgagatggttgccgggcagatgatc
gatgtcgggtcgcttcgagcgttgctcgacccggccgacctggtgatcgcccacaatgcc
ggcttcgatcgtccgttctgcgaggcgttttcaagcatgttttccggcaaggcatgggcc
tgttccgtcaaggaagtcgattgggcgacgcgcgggttcgagggcacgaggctcggctat
ctgattggtcaaagcggctacttccacgatggccatcgcgccgtcgatgactgtttcgct
ctgctcgaggtgctcgccggcgccggcggtgtgacggagccaggcgcgtttgcggaactt
ctcaagacaagtcagcgctcacgcgtgcgcatcttcgccgagcacagccccttcgacatg
aaagatcatctgaaggctcggggataccgctggtcggatggcagcgacggccgtccgaaa
tcctggtggatcgaaatcgacgaggagcggctcaccgcggagctcgccttcctgcggtca
gagatctaccggtgggaagaggccgacccaccggtcataaggccgacggcgtttgatcgg
tacaaggcttga
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