Sinorhizobium fredii USDA 257: USDA257_c32370
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Entry
USDA257_c32370 CDS
T02188
Symbol
ybiO1
Name
(GenBank) putative MscS family protein YbiO
KO
K22044
moderate conductance mechanosensitive channel
Organism
sfd
Sinorhizobium fredii USDA 257
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sfd02000
]
USDA257_c32370 (ybiO1)
Transporters [BR:
sfd02000
]
Other transporters
Pores ion channels [TC:
1
]
USDA257_c32370 (ybiO1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MS_channel_2nd
MS_channel_3rd
MS_channel_1st
Motif
Other DBs
NCBI-ProteinID:
AFL51805
UniProt:
I3X7E9
LinkDB
All DBs
Position
3395961..3398084
Genome browser
AA seq
707 aa
AA seq
DB search
MSSTFRLGGQGAVLALFALVLQLAGGFDAPLAAQEVPTTAPPAKVQQLIELMDDPEVRQW
LAAKQTTPPPAVATPPSGVASQWVAQIRRHLGGMREAAPRLVPEWMAARERIAAEMQNQG
AMPILRGFGFVLLVGYGAEFLLRYLLRRSANRSDATSGHGLAALFRIAPLIAFAIAAIAA
FVLADWPMRLEAAVAPLLIAWIAARLLIAVAAAMAKPAYEKTQEVEAAQLDALPAPDVAR
FWHGRFVVFVCAVAVLWAVLDMMQALAFPADVRDLTAAGLGLVILGIAIDTALRRPAADV
TAGRRLLANALLVAFLILLWFVWSAGMKVLFWVGVYIVGLPPLLRFVSATTRTMRDAEAA
DNIRVMRNVLIDRGARFAIIALAAAWLAVVFRFNGSTMMQDDAFNRVFRGVLAGIVILLA
ADFIWQLVKEFINLRLKQSSIEMADPAQVARDMRLRTLLPILRNFLAVFIAVVAGMMVLS
GLGVAVGPLIAGAGVFGVAIGFGSQTLVKDILSGVFYMMDDAFRVGEYIQSGSYMGTVES
FSIRSVKLRHHRGPVFTVPFGSLGAVQNMSRDWVIDKFKINVSYDTNIAKVKKVVKGVGA
ALLEDEELGPLIIETVKMKGVEQFGDYGVTLSFAMTTKPGHQTQIRRRAQAMIKETFDAN
GINFASPTVQVAGDDGQATAAAAATRDAIAKKNAALAVPQGGEAAAE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgacgttcaggcttggcgggcaaggcgcagtcctcgccctgttcgccctcgtt
cttcaactggctggtggtttcgacgctcccctggctgcgcaggaggttccgacaacggcg
ccgccggccaaggtccagcagttgatcgagctgatggacgacccggaggtacgtcaatgg
ctggccgccaagcagaccacgccgccgccggcggttgcgacgccgccaagcggtgttgcc
tcgcaatgggtcgcgcaaatcaggcgacatctcggcggcatgcgcgaagccgccccgcga
ctggttcccgagtggatggcggcaagagagcgcattgcggccgagatgcagaaccagggc
gcgatgccgatcctgcgcggtttcggcttcgtgctcctggtcggctatggcgccgaattc
ctgctgcgctacctcctgcgccgcagtgcaaaccgcagcgacgcgacgtcgggacacggc
ctggctgccctgtttcgcatcgcgccgctcatcgccttcgcgatcgcagcgatcgccgct
ttcgtcctggccgactggccgatgcggctggaggcagcggtcgcaccattgctgatcgcc
tggatcgctgcccgcttgctgattgccgtcgcagcggcaatggccaagccggcatacgag
aaaacgcaggaggtggaggcggcccagctggacgcattgcctgcgccagatgtcgcccgg
ttttggcatgggcgctttgttgtcttcgtctgcgccgtcgccgtcctgtgggccgtcttg
gatatgatgcaggcccttgccttccccgccgacgttcgggacttgaccgctgccggactc
ggtctcgttatcctgggaattgcaatcgacacggcgcttcgccggcccgccgcggacgtg
acggccgggcggcggttgttggccaatgcgctgctcgttgccttcctcattctactatgg
ttcgtctggagcgccggcatgaaggtgctgttctgggtcggcgtctatattgtcggtctg
ccgccgctgctgcgcttcgtaagtgctacaacgcggacgatgcgggatgccgaagcggcc
gacaacatccgggtgatgcgcaatgtgctgatcgaccgcggtgcccggtttgcgatcatc
gcgctcgccgccgcctggctcgccgtcgttttccgcttcaacggcagcacgatgatgcag
gacgatgccttcaaccgcgtctttcgcggcgtgcttgccggcatcgtcatcctgcttgcg
gcggatttcatctggcaactggtgaaggaattcatcaatctccgcctgaaacaatcaagc
atcgaaatggccgatccggcgcaggtcgcccgcgatatgcggctgcggactctgctgccg
atcctgcgcaattttctcgcggtcttcattgcggtggtcgccgggatgatggtgctctcc
ggcctcggagtcgctgttggtccgcttatcgcgggggcgggcgtcttcggcgtcgccata
ggcttcggctcgcagacgctcgtcaaggatattctcagcggcgtgttctacatgatggac
gatgccttccgggtcggcgaatacatccagagcggcagctatatggggacagtcgaatcc
ttcagcatccgctccgtaaagctgcgccaccaccgtggtccggtgttcaccgtgcctttc
ggctcgctcggtgcggtccagaacatgagccgtgactgggtcatcgacaagttcaagatc
aacgtctcctacgacaccaatattgccaaggtgaagaaggtggtgaagggcgttggggcc
gcgctgctggaggatgaggagctcggaccgctgatcatcgagaccgtcaagatgaagggc
gtcgagcagtttggcgactacggcgtcaccttgagcttcgccatgaccaccaaaccgggt
caccagacccagatcaggcggcgggcccaggcgatgatcaaggagacctttgacgccaat
ggtatcaattttgcctcgccgaccgtccaggtggcgggcgacgacggacaagcgactgcg
gcagcggccgcgacccgcgatgccattgccaagaagaacgctgccttggccgtgccacag
ggaggggaggccgccgcggaatag
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