Sinorhizobium fredii USDA 257: USDA257_c33230
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Entry
USDA257_c33230 CDS
T02188
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd03030
DNA replication
sfd03430
Mismatch repair
sfd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
USDA257_c33230 (dnaE1)
03430 Mismatch repair
USDA257_c33230 (dnaE1)
03440 Homologous recombination
USDA257_c33230 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfd03032
]
USDA257_c33230 (dnaE1)
03400 DNA repair and recombination proteins [BR:
sfd03400
]
USDA257_c33230 (dnaE1)
Enzymes [BR:
sfd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
USDA257_c33230 (dnaE1)
DNA replication proteins [BR:
sfd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
USDA257_c33230 (dnaE1)
DNA repair and recombination proteins [BR:
sfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
USDA257_c33230 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
AFL51887
UniProt:
I3X7N1
LinkDB
All DBs
Position
3495317..3498814
Genome browser
AA seq
1165 aa
AA seq
DB search
MAGDGSIGQTTVGPADPQFVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNL
FAALEFSQKAADDGLQPIIGCQLSIDMEDEAEGERRSHAQQLAKLPSIVLIAASDEGYKR
LVDLVSRAYLEGEGHQAVRIARSWLAAGGTDGLIALTGAGGGPVDLALKAGSPALAEARL
KTLIELFGNRLYVELQRHGSYDRRQESRLVELAYRYDIPLVATNEAFFPSPADYDAHDAL
MAVAHNAVVSDDRRFRLTSDHYLKSRKEMAALFADLPEALENTVEIARRCSFMLKTRGPI
LPRFTGASDDPEEAERAESAELRRQAEEGLELRLAKLGMAPGYKEEDYRERLAFELGVIE
RMKFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYSLTITDVDPMRFSLLFERFLN
PERVSMPDFDIDFCQDRREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPY
GQVDKICKLVPNNPANPTPLSKAIEEEPRLQEEAEKEPVVGRLLDIAQKIEGLYRHASTH
AAGIVIGDRPLSQLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDF
VAKRGIAVDLASIPLDDPKTYEMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVA
LYRPGPMENIPVYNARKHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLG
EADLLRRAMGKKIKEEMDKQRARFVEGAIGNGVSKPQADLIFDLLAKFANYGFNKSHAAA
YAIVSYQTAYMKAHYPVEFLAASMTLDMSNTDKINDFRQDAMRLGIQVFAPSVQTSFRNF
ETGENRIYYSLAAIKGVGESAVDHIVTTRGDRPFASLEDFCLRIDPKLLNRRVFESLIAA
GAFDCFGYDRAELIGGLDRILGFAQRAQENKLSGQSDMFGAGAATGPEKVALPVFTPWLA
SEKLHREFQVLGFYLSAHPLDTYNKLLAKMRVQTFADFSAAVKQGATAGRLAGTVTSKQE
RKTRTGNKMGIVAFSDASGQFEAVLFSEMLNQYRDLLEPGKSLVMTVDAEERPEGIGLRI
RTLRSLEEESLQMQKALRVYVRDSGPLRSITSHLNAKGDGLVSFIVIKDNGQREIEVELS
EKYRISPEIAAALRSAPGVVDVELV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtgatggaagcatagggcagaccacggtgggtccggcagacccgcagttcgtg
cacctgcgcgtgcattcggcctattcgctgctggaaggggcgctgccgctcaagaagatc
atcggcaaggcagtggccgacgatcaaccggccatcggcattgccgataccaacaatttg
ttcgcggcactcgagttttcccagaaggccgcggacgacggattgcagccgatcatcggc
tgccaactatccatcgatatggaggacgaggcggagggggaacggcgcagccatgcgcag
caactcgccaagctgccttcgatcgtcctgattgccgcgtccgacgaaggctacaagcgg
ctcgtcgacctcgtcagccgtgcctatcttgaaggggagggacatcaggcggtgcgcata
gcgcggtcctggcttgcggcgggcggcaccgatggtctgatcgccttgaccggcgccggc
ggcggccccgtcgacctggcgctgaaggccggctcgccggcccttgccgaggcgcgcctc
aaaacgctgatcgagctgttcggcaatcgtctctatgtcgaattgcagcgccacggcagt
tacgaccgccgccaagagagccgcctggtcgaacttgcctatcgctacgacattccgctc
gttgcgacgaatgaggccttcttcccttcgccggccgattatgatgcgcacgacgcgctg
atggccgtcgcccacaacgccgtggtctccgacgatcgccgcttccggctcacgtccgat
cattatctcaagagccgcaaggaaatggcggcgcttttcgccgatctgccggaggcgctg
gaaaacaccgtcgagatcgcccgccgctgctccttcatgctgaagacccgcgggccgatc
ctgccgcgcttcacaggtgcctcggatgatcccgaggaggccgagcgcgccgagtcggcg
gagcttcgccgccaggcggaggaggggctggagctgcgcctggccaagctcggcatggcg
ccgggctacaaggaagaagactatcgcgagcgcctggccttcgaactcggcgtcatcgag
cggatgaagttcccgggctacttcctgatcgttgcggacttcatcaaatgggcgaagcag
catgacatccccgtcggcccgggccgcggctctggcgccggctcgctggtcgcctattcg
ctgacgatcaccgatgtcgatccaatgcgtttctcgctgctgttcgaacgcttcctcaat
ccggagcgcgtctcgatgccggacttcgacatcgacttctgccaggaccgccgcgaagag
gtgatccgctacgtgcagcagaagtacgggcgcgagcaggtggcacagatcatcaccttc
ggatcgctgcaggcgcgcgcggcgctgcgcgacgtcggacgcgtgctggaaatgccctat
ggtcaggtcgacaagatctgcaagctggtgccgaataatccggcaaatccgacaccgctt
tcaaaggcgatcgaggaggagccgcgcttgcaggaggaggcggaaaaggagcccgtcgtc
ggccggcttctcgacatcgctcagaagatcgagggtctctatcgccacgcgtcgacgcat
gccgcgggcatcgtcatcggcgaccggccgctgtcgcagctggtgccgatgtaccgcgat
ccgcgctccgacatgccggtcacgcagttcaatatgaagtgggtggagcaggccggcctc
gtcaagttcgacttccttggcctgaagacgctgacggtgctgaagaccgcggtcgacttc
gtcgccaaacgcggcatcgcggtcgatcttgcgagcattccgctcgatgatcccaagacg
tacgagatgctctcccgcggtgagacggtcggggtgttccaggtggaaagtgccggcatg
cgcaaggcgctgatcggcatgcggcccgactgcatcgaggacatcatcgccctggtcgcc
ctctaccggccgggtccgatggagaacattccggtctacaacgcccgcaaacacggcgag
gaagagatcgaatcgatccatccgaagatcgactatctgctcaaggaaacgcaaggggtt
atcgtctatcaggagcaggtgatgcagatcgcccaggtgctttcgggctattcgctcggc
gaggccgatctcttgcgccgcgccatgggcaagaagatcaaggaggaaatggacaagcag
cgggcccgcttcgtagaaggcgcgatcggcaatggcgtgtcaaagccgcaggcagacctg
atcttcgatctgctcgccaagttcgccaattacggcttcaacaagtcgcacgcggccgcc
tacgccatcgtctcctaccagacggcctatatgaaggcgcactatccggtcgagttcctg
gcggcgtcgatgaccctcgacatgtcgaacaccgacaagatcaacgacttccgccaggac
gcgatgcgtctcggcattcaggtgttcgctccctcggtgcagacctcgttccgtaacttc
gagaccggcgagaaccgcatctactactcgcttgccgccatcaagggcgtgggcgaatcc
gccgtcgaccacatcgtcactactcgcggcgatcgtccctttgcaagcctcgaggatttc
tgcctgcgcattgatccgaagctcttgaacaggcgcgtcttcgaaagcctcatcgccgca
ggcgccttcgattgcttcggctacgaccgggccgaactgatcggcggactcgaccggatc
ctcggatttgcgcagcgcgcccaggaaaacaagctgagcggccagagcgacatgttcggc
gccggagcggcgacggggccggagaaggttgcgctgccggtctttacgccctggcttgcc
tcggagaagctgcaccgggagttccaggtgctcggcttctacctgtccgcccatccgctc
gacacctacaacaagctcttggcgaagatgcgcgtgcagacattcgcggatttttccgcg
gctgtgaagcaaggtgcgaccgcaggccggctcgccggcacggtgacctcgaagcaggag
cgcaagacgcgcaccggcaacaagatgggcattgtcgccttttcggatgcgtcgggccag
ttcgaggcggtgctcttctcggagatgctgaaccagtaccgcgacctcctggagcccggc
aaatcgctggtgatgaccgtggatgcggaggagcggccggaaggcatcggacttcgcatc
cggaccctgcgctcgctcgaagaggaatcgctgcagatgcagaaggcgctgcgcgtctat
gtgcgcgattccggccccttgcgctccatcacctcgcacctcaatgccaagggggatggc
ctcgtctcgttcatcgtcatcaaggacaatggtcagcgggagatcgaggtggagctcagc
gaaaaatatcggatctcgccggagattgccgcagctcttcgctcggcgcccggtgtagtg
gacgtcgagctcgtatag
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integrated database retrieval system
