Sinorhizobium fredii USDA 257: USDA257_c33620 Help Entry USDA257_c33620    CDS       T02188                                  Symbol rne Name (GenBank) ribonuclease E   KO K08300   ribonuclease E [EC:3.1.26.12] Organism sfd  Sinorhizobium fredii USDA 257 Pathway sfd03018   RNA degradation Brite KEGG Orthology (KO) [BR:sfd00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     USDA257_c33620 (rne)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:sfd03019]     USDA257_c33620 (rne)    03009 Ribosome biogenesis [BR:sfd03009]     USDA257_c33620 (rne) Enzymes [BR:sfd01000]  3. Hydrolases   3.1  Acting on ester bonds    3.1.26  Endoribonucleases producing 5'-phosphomonoesters     3.1.26.12  ribonuclease E      USDA257_c33620 (rne) Messenger RNA biogenesis [BR:sfd03019]  Prokaryotic type   Bacterial mRNA degradation factors    RNA degradosome components     Ribonucreases      USDA257_c33620 (rne) Ribosome biogenesis [BR:sfd03009]  Prokaryotic type   rRNA processing factors    USDA257_c33620 (rne) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNase_E_G RNase_E_G_Thio S1 DnaJ_CXXCXGXG Motif Other DBs NCBI-ProteinID:  AFL51926 UniProt:  I3X7S0 LinkDB All DBs Position complement(3534629..3537406) Genome browser AA seq 925 aa AA seqDB search MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEDARREDDIEPVETANDHAAAPTKDE VPAEAAETATETPEEATEVEAEKPKAKPKRTRRPKAKASEQKEEAPGDAEASEEGSSGEM AAMVDVDSISEDVDARRRRDDDDDDDDDGHDGEKEIIESVGAEDAMEEVPDRHARKPRKQ YRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNLQ DRKRLKEIARGLDVPQGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLNSTAPCL VYEEGSLIKRSIRDLYNKDISEIIVSGEEGYKEAKSFMKMLMPSHAKVVQPYRDVHPIFS RSGIEAQLDRMLQPQVTLKSGGYIIMNQTEALVSIDVNSGRSTREHSIEDTALQTNLEAA EEVARQLRLRDLAGLVVIDFIDMEEKRNNRAVEKKLKDCLKNDRARIQVGRISHFGLLEM SRQRIRASVLESTMQSCPHCNGTGHVRSQSSVALHVLRGIEEYLLKNTTHDITVRTIPEI ALYLLNQKRGTITDYERRFGVSIIIEADAHVGAQHFAIDRGEPVENPVKIEQILHFAPEP EDEEDVVIEEDLDEEEAEEITAERREQPKAQQSDDQNGRKRKRRRRRRGKGAGQTPESAA AEAGDMDDGAVDEADDAEDEGEAQDALTADGDQKRKRRRRGKRGGRRNRPELSEAEGESA LAAESGEEPADAEEAAEAEDADVAAAAAIEQVVDAAPVVAEPPAEEAKPAKPKRSRKKAV VAEAPAENADTAAEQAIEAQPNEPVPAAVEEAAADLEGAKPARANRDLTTIASEPVVTSN VAKGEAEEEPAKPKKGGWWQRRGFF NT seq 2778 nt NT seq  +upstreamnt  +downstreamnt atggcagagaaaatgcttatcgatgcgtctcactcagaggagacgcgcgtcgttgtcgtt cgcgggaaccgcatagaagaattcgatttcgaatcggaacataagaagcaaatccgcggc aatatttatctggccaaggtgaccagagtggagccgtcgctccaggcggccttcgtggat tacggcggcaatcgccacggctttctggccttcgccgaaattcaccccgactactaccag atccccctcgccgatcgtcaggccctgttgaaggccgaagccgaggacgcccgccgcgag gacgacatcgagccggtcgaaaccgcaaacgatcatgccgcggcgccgacaaaggacgag gttccggccgaggccgccgagactgcaaccgagacgccggaagaggcaacggaagtcgag gcggagaagcccaaggccaagccgaagcgcacgcgccggccgaaagccaaggccagcgag cagaaggaagaagctccgggcgacgccgaagccagcgaagagggcagcagcggtgaaatg gccgcgatggtcgatgtcgactcgatttccgaggacgtcgatgcgcgccgtcgccgcgac gacgatgatgatgacgatgacgacggccatgacggcgagaaggaaatcatcgagtccgtc ggtgccgaagacgcgatggaagaagttccggaccgccacgcccgcaagccgcgcaagcag tatcgcatccaggaagtgatcaagcgtcggcagatccttcttgttcaggttgccaaggaa gaacgcggcaacaagggcgcagcgctcaccacctatctttcacttgccggccgctattcg gtgctgatgccgaacacggcgcgtggcggtggcatctcccgcaagatcaccaacctgcag gatcgcaagcgcctgaaggaaatcgcccgcgggctcgacgtgccgcagggcatgggcgtg atcctgcgcacggccggcgcgaaccgcacgaaggtcgaggtcaagcgcgacttcgaatat ctgatgcgcctgtgggagaacgtccgcacgctgacactgaattcgaccgccccctgcctc gtctacgaggaaggcagcctgatcaagcgctcgatccgcgatctctacaacaaagacatc agcgagatcatcgtttccggtgaagagggatacaaggaagccaagagcttcatgaagatg ctgatgccgagccacgcgaaggtcgtgcagccctatcgcgacgtgcatccgatcttctcg cgatccggcatcgaagcccagctcgatcgcatgctgcaaccgcaggtgacgctgaagtcg ggcggctacatcatcatgaaccagaccgaagcgctagtttcgatcgacgtgaactccggg cgctccacccgcgagcattcgatcgaggacaccgcgcttcagaccaatctggaggcggcc gaggaggttgcgcggcagctgcgtcttcgcgacctcgccgggcttgtcgtcatcgacttc atcgacatggaagaaaagcgcaacaaccgcgccgtcgagaagaagctcaaggattgcctg aagaacgaccgggcgcgtatccaggtcggccgcatctcgcatttcggtctgcttgaaatg tcgcgccagcgcattcgcgcttcggtgctcgaaagcacgatgcagtcctgcccgcattgc aacggcacgggccatgtccgctcgcagtcgtccgtcgcgctgcatgtcctgcgcggtatc gaggagtatctgctcaagaacaccacgcacgacatcaccgtccgcacgatcccggaaatc gcgctttacctgctcaatcagaagcgcggcacgatcaccgactatgaacggcgcttcggc gtctccatcattatcgaagccgatgcccatgtgggcgcgcagcacttcgcgatcgaccgg ggcgaaccggtcgaaaatccggtgaagatcgagcagatcctgcatttcgcgcctgaaccg gaagacgaagaagacgtcgtcatcgaggaagatctggacgaagaagaagcggaagagatc accgccgaacgccgggagcagccgaaggcacagcagtccgacgaccagaatggccgcaag cgcaagcgccgccgccgccgccgcggcaagggcgcaggccaaacgccggaatcggccgcc gccgaagccggagacatggacgatggcgcagtcgacgaagccgacgatgccgaggacgaa ggcgaagcccaggatgctctaacggcagacggcgaccagaagcgcaagcgccgccgtcgc ggcaagcggggcggccgccgcaaccggccggagctgtcggaagccgagggcgaatccgct cttgcggcggaatccggtgaagaaccggctgatgccgaggaagcggcggaggcggaggat gcggatgttgctgccgccgcggccatcgaacaggtcgtggatgccgcgcctgtcgtcgca gagcccccggcagaggaagcaaagccggcaaagccgaagcgcagccgcaagaaggccgtc gtggccgaggcaccggcggaaaatgccgacacagccgccgaacaggctatcgaagcgcag ccgaacgaacccgtccctgctgcggtggaagaagcggccgcggacctggaaggcgccaag cccgcacgcgcgaaccgcgatctgacgacgattgcctcagagcccgtcgtgacctcgaac gtcgccaagggcgaagccgaagaagagccggccaagccgaaaaagggcggctggtggcag cgccgcggctttttctaa

DBGET integrated database retrieval system