Sinorhizobium fredii USDA 257: USDA257_c41920
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Entry
USDA257_c41920 CDS
T02188
Symbol
xynB
Name
(GenBank) beta-xylosidase XynB
KO
K01198
xylan 1,4-beta-xylosidase [EC:
3.2.1.37
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd00520
Amino sugar and nucleotide sugar metabolism
sfd01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00520 Amino sugar and nucleotide sugar metabolism
USDA257_c41920 (xynB)
Enzymes [BR:
sfd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.37 xylan 1,4-beta-xylosidase
USDA257_c41920 (xynB)
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GFIT
Motif
Pfam:
Glyco_hydro_43
GH43_C2
Motif
Other DBs
NCBI-ProteinID:
AFL52732
UniProt:
I3XA26
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Position
complement(4372599..4374224)
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AA seq
541 aa
AA seq
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MAASIRNPILPGFNPDPSICRVGDDYYIATSTFEWYPGVQIHHSRDLVNWRLVRRPLERA
SQLDMRGNPDSCGIWAPCLSYCDGLFWLVYTDVKRFDGNFKDAHNYIVTAEAVEATWSDP
VYVNSSGFDPSLFHDDDGRKWFLNMQWNHRSESFGGAPKHPAFDGILLQEWDERTRKLVG
SVKNIFAGSSLGLVEGPHLFKRDGWYYLTTAEGGTGYDHAVTMARSRAIDGPYEMHPNVY
LITSKDHPEAPLQRAGHGQYVETPDGQAYHTHLCGRPLPPHRRCTLGRETALQKCAWRED
GWLYLESGSVVPEITVPAPAETSVVPKPAVIETDFDEGVLAPELQWLRTPLPERIFSLER
REGHLRLFGRESIGSWFEQALVARRQEHHSFRAETVVDFAPDTYQQVAGLTHYYNRHKFH
ALGVTWHETLGRVVSILSCPGDFPHGRLEYPAGSGAAVPEGPIHLAMEIRGNDLQFFWRA
SAQQDWASIGPALDAGVISDEGGRGEHGSFTGAFAGMFAFDTSGSGIPADFDVFRYEALA
V
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgtcgatccgcaatccgattctgccgggcttcaatcccgacccgtcgatctgc
cgcgtcggcgacgactactacatcgcgacgtccacattcgagtggtatccgggcgtgcag
atccaccactcgcgcgacctggtgaactggcgcctcgtccgacggccgctggagcgtgca
agccagctcgacatgcgcggcaatcccgatagttgcggcatctgggcgccgtgcctttcc
tattgcgacgggctgttctggctcgtctatacggatgtcaagcgtttcgacggcaacttc
aaggatgcgcataattacatcgtcacggccgaagcggtggaggcgacgtggtcggatccg
gtctatgtcaattcgtcgggcttcgatccgtctctctttcacgacgatgacggccgcaag
tggttcctcaacatgcagtggaaccaccgttccgagagcttcggcggtgcgccgaagcat
ccggccttcgatggcatcttgctgcaggaatgggacgagcggacgcgcaagctcgtcggc
tcggtcaagaacatcttcgccggcagttcgctcgggctcgtcgaggggccgcatctcttc
aagcgtgacggctggtattacctgaccacggccgaagggggcacaggctatgatcatgcg
gtgactatggcgcgctcgagggcgatcgacggcccctacgagatgcatccgaacgtttat
ctcatcacctcgaaggaccatccggaagcgccgttgcagcgggccggccacggccaatat
gtcgagacgccggacgggcaagcctatcacacgcatctttgcggccggccgctgccgccg
catcgccgctgcacgctcggccgcgagacggcgctgcagaagtgcgcctggcgggaggat
ggctggctctatctggagagcggcagcgttgtgccggagattaccgtgccagccccggcc
gagacgagcgtcgttccgaagcccgccgtcatcgagacggatttcgacgagggggtgctt
gcgcccgagctacaatggctgcgcaccccgctgccggagcggatcttttcgctggagagg
cgggaagggcacttgcgcctgttcggccgcgaaagcatcggtagttggttcgagcaggca
ctggtcgccagacgccaggagcatcattcattccgggccgagacggtcgtcgacttcgcg
cctgacacctaccagcaggtcgctggcctgacgcactactataaccgccacaagttccat
gctctcggcgtcacctggcacgagacgcttggccgtgtcgtcagcatcctttcatgcccg
ggcgatttcccgcacgggcgtctggagtatccggccggtagcggcgctgcggttccggaa
ggcccgattcatctggcgatggagatcaggggcaatgatctccaattcttctggcgggcg
tcggcgcagcaggattgggcgtcgatcggacccgcgctggatgcaggcgtgatttcggac
gagggcggccgcggcgagcatggttccttcaccggcgccttcgccggcatgttcgccttc
gacacctccggcagtggcattccggcggatttcgacgtgtttcgctacgaggcgcttgcg
gtgtaa
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