Sinorhizobium fredii USDA 257: USDA257_c44690
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Entry
USDA257_c44690 CDS
T02188
Symbol
uvrD
Name
(GenBank) putative DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd03420
Nucleotide excision repair
sfd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
USDA257_c44690 (uvrD)
03430 Mismatch repair
USDA257_c44690 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfd03400
]
USDA257_c44690 (uvrD)
Enzymes [BR:
sfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
USDA257_c44690 (uvrD)
DNA repair and recombination proteins [BR:
sfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
USDA257_c44690 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
USDA257_c44690 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
Viral_helicase1
AAA_11
DEAD
Motif
Other DBs
NCBI-ProteinID:
AFL53007
UniProt:
I3XAV1
LinkDB
All DBs
Position
4638975..4641620
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AA seq
881 aa
AA seq
DB search
MSKGFDDIPFFDEEPAPRKPAPAAGGIAARAMAARDKTQRPDYFSGLNPEQREAVETLEG
PVLVLAGAGTGKTRVLTTRIAHILSTGRAYPSQILAVTFTNKAAREMKERIGVLVGHAVE
GMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQLIQAEGLDDKRWPAKQF
AGMIDTWKNKGLDPAHIPEGDARAFANGKGRELYAAYQNRLLTLNACDFGDLLLHPIRMF
RANPDVLKDYHGKFRYILVDEYQDTNTAQYMWLRLLAQRHQGSRGKHQVSPQEHPSPTPP
HKGEGQARAASSLSTSHARDEDTAARQSSPSPLWGGVAEGKSHGTAEGKPHVNICCVGDD
DQSIYGWRGAEVDNILRFEKDFPGAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLF
TERSHPDDEKVHVHAAWDSEEEARAVGEEIEQLQRQKHKLNDIAILVRASFQMREFEDRF
VTLGLNYRVIGGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVNTPKRGLGDTTVRNLH
DYARARDIPMLAAATEIIDTDELKPKARKALFDVVTDFRRWQTLLETTPHTELAEQILDE
SGYTAMWQADKSAEAPGRLENLKELIRSMEAFESMRGFLEHVALVMDAEQNEDMDAVSIM
TLHSAKGLEFDTVFLPGWEEGLFPHQRALDEGGRAGLEEERRLAYVGITRAKHRCHIWFV
SNRRIHGLWQSTMPSRFLDELPIDHIEVAEQDVSYGGYNRGGYGQSRFDKADPFENTYQT
PGWKRAQQHRTDATRDNWGTRSGHAVERIGYGESGPRTRTIEGELIAKSTTAEPSRFSVG
DRVFHLKFGNGNIAAIEGNKLTIDFDRAGQKRVLDGFVERV
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaggtttcgacgacattcccttcttcgacgaggagccggcgccgcgcaaaccc
gcgcctgccgccggcggcatcgccgcgcgcgccatggccgcccgcgacaaaacccaacgg
ccggactatttctccggactcaatccggaacagcgcgaagccgtcgaaacgcttgagggg
ccggtcctggtgctcgccggcgccggtaccggcaagacgcgcgtgctgaccacccgcatc
gctcatattctttcgaccggccgcgcctacccgtcacagatccttgccgtgaccttcacc
aacaaggcggcgcgcgagatgaaggagcgcatcggcgtgctcgtcggccatgcggtcgaa
ggcatgccctggctcggcaccttccactcgatcggcgtcaagctcctgcgccgccatgcc
gaactcgttgggctgaggtccgatttcaccatcctcgataccgacgacgtggtccgcctg
atcaagcagctcatccaggcggaaggcctcgacgacaaacgctggccggccaagcaattc
gccggcatgatcgacacctggaaaaacaagggcctcgatccggcgcatattcccgaaggc
gacgcgcgcgccttcgccaacggcaagggccgcgagctctatgccgcctatcagaaccgg
ctgctaacgctgaatgcctgcgacttcggcgacctgctcctgcatccgatccggatgttc
cgcgccaatccggacgtgctcaaggactatcacggcaagttccgctacatcctcgtcgac
gagtaccaggacaccaatacggcgcaatatatgtggctgcggctcttggcgcagcggcac
caggggtcgcggggaaaacaccaagtttcgcctcaagaacacccctccccaacccctccc
cacaagggggaggggcaagcccgtgcggcctcctccctttccacatcgcacgcgagagat
gaggacacggcggcgcgtcagtctagcccttcccccttgtggggaggggttgcggagggg
aaatcccacggcacggcggaagggaagccccacgtcaacatctgctgcgtcggcgacgac
gaccagtcgatctatggctggcgcggcgccgaggtcgacaacatcctccgcttcgagaag
gatttccccggcgccaaggtcatcaagctcgagcgcaactaccgctcgaccgaacatatc
ctcggcgccgccgcgcatctgatcgcccacaacgagggccggcttggcaagacgctcttc
accgagcgcagccatccggacgacgagaaggtgcatgtccacgccgcctgggattcggaa
gaggaagcacgcgccgtcggcgaggagatcgagcagctccagcgccagaagcacaagctg
aacgacatcgcgatcctggtgcgcgcctccttccagatgcgcgaattcgaagaccgcttc
gtcaccctcggcctcaattatcgcgttatcggcggcccgcgcttctacgagcggctggaa
atccgcgatgccatggcctattttcgcctcgtctgccagccggccgacgacctcgccttc
gagcgcatcgtcaacacgccgaagcgcggcctgggtgataccaccgttcgcaacctgcac
gactatgctcgcgcccgcgacattccgatgcttgccgccgcaaccgagatcatcgacacc
gacgagctgaagccgaaggcacgcaaggcgctgttcgacgtcgtcaccgatttccgccgc
tggcagactttgctcgaaacgacgccgcatacggagcttgccgagcagatcctcgacgag
agcggctacaccgccatgtggcaggccgacaagtccgccgaagcgccggggcggctcgaa
aacctcaaggaactcatccgctcgatggaggccttcgaatcgatgcgcggcttcctggag
catgtcgcgctcgtcatggatgccgagcagaacgaggacatggatgccgtgtcgatcatg
acgctgcattcggccaaaggcctggaattcgacaccgtcttcctgccgggttgggaggaa
gggctgttcccacaccagcgcgccctcgacgaaggcggccgcgccggcctcgaggaggag
cgccgcctcgcctatgtcggcatcacccgggccaagcaccgctgccatatctggttcgtc
tcgaaccgccgcatccatggcctctggcagtcgacgatgccctcgcgcttcctggacgaa
ctgccgattgaccatatcgaagttgccgagcaggacgtctcctatggcggctacaatcgc
ggcggctacggccaatcgcgcttcgacaaggccgaccccttcgagaacacctaccagacg
cccggctggaaacgcgcccagcagcaccgcacagacgccacccgcgacaactggggtacc
cgctccggtcacgccgtcgagcgcatcggctacggcgagtcaggtccccgcacccgcacc
attgaaggcgaactcatcgccaagtcgacgactgcggaaccctcgcgcttcagtgtcggc
gaccgcgtcttccatctcaaattcggcaacggcaacattgccgcgatcgaaggcaacaag
ctgacgatcgatttcgaccgcgccggtcagaagcgcgtgctggatggatttgtcgaaaga
gtgtga
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