Sinorhizobium fredii USDA 257: USDA257_c44970
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Entry
USDA257_c44970 CDS
T02188
Symbol
ddl
Name
(GenBank) D-alanine--D-alanine ligase Ddl
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd00470
D-Amino acid metabolism
sfd00550
Peptidoglycan biosynthesis
sfd01100
Metabolic pathways
sfd01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
USDA257_c44970 (ddl)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
USDA257_c44970 (ddl)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
USDA257_c44970 (ddl)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sfd01011
]
USDA257_c44970 (ddl)
Enzymes [BR:
sfd01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
USDA257_c44970 (ddl)
Peptidoglycan biosynthesis and degradation proteins [BR:
sfd01011
]
Precursor biosynthesis
Amino acid ligase
USDA257_c44970 (ddl)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp_4
ATP-grasp_3
CPSase_L_D2
GARS_A
ATP-grasp
Motif
Other DBs
NCBI-ProteinID:
AFL53035
UniProt:
I3XAX9
LinkDB
All DBs
Position
complement(4668532..4669458)
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AA seq
308 aa
AA seq
DB search
MSGRHLAVLMGGFSSERPVSLSSGAACADALEAEGYRVSRVDVGRDVAAVLADLRPDVVF
NALHGPFGEDGTIQGILEYLEIPYTHSGVLASALAMDKAQAKHVAKAAGIPVADALIMDR
REFGNVHPMRPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGR
ELTCGVMGDVALGVTEIIPQGHAFYDYDSKYVKGGSTHVIPARISPNIYQKIQSLAVKAH
QAIGCRGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWM
VEDASCLR
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcaggcatcttgctgtcctgatgggcggattttcctcggagaggccggtgagc
ctgtcttccggggcggcttgtgcggatgccctggaggccgagggttaccgggtttcgcgc
gtcgatgtcgggcgtgacgttgccgccgtgctcgccgatttgcgtccggatgtcgtcttc
aatgccctgcatgggcccttcggcgaggacgggacaatccagggcatcctggaatatctc
gagattccctatacccactccggcgtccttgcctcggcgctagcgatggacaaggcgcag
gcgaaacatgtcgccaaggccgccggcattcccgttgccgacgctttgattatggaccgc
cgcgagttcgggaacgtccatcctatgcggccgccttatgtggtgaagccggtgcgggaa
gggtcgagcttcggcgtcgtcatcgtcaaggaagaccagtcgcatccgccccaggtcatc
acatccagcgaatggcgctacggcgaccgcgtgatggtcgagcgctacattgccggccgc
gaactcacctgcggcgtcatgggcgacgtggcactcggcgtcaccgaaatcattccgcag
gggcatgccttttacgactatgattccaaatatgtaaaaggtggttcaacacacgtcatt
ccggcgcggatttcaccaaatatttaccaaaaaatacaatccttagcggtgaaggcgcat
caggcgatcggttgccgcggcgtcagccgatcggacttccgtttcgatgatcgtggcgat
ggcgagggcgagttgatctggctggagatcaatacgcaacccggcatgaccccgacctcc
ctggtgccagaaatggcgcaacatgcgggccttcagtttggtgagtttctaaggtggatg
gtggaggacgcatcgtgcttgcgttga
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