Sinorhizobium fredii USDA 257: USDA257_c46450
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Entry
USDA257_c46450 CDS
T02188
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
USDA257_c46450 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfd03019
]
USDA257_c46450 (recQ)
03400 DNA repair and recombination proteins [BR:
sfd03400
]
USDA257_c46450 (recQ)
Enzymes [BR:
sfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
USDA257_c46450 (recQ)
Messenger RNA biogenesis [BR:
sfd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
USDA257_c46450 (recQ)
DNA repair and recombination proteins [BR:
sfd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
USDA257_c46450 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HHH
AAA_30
HMBD
Motif
Other DBs
NCBI-ProteinID:
AFL53182
UniProt:
I3XBC6
LinkDB
All DBs
Position
complement(4815972..4817834)
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AA seq
620 aa
AA seq
DB search
MSESHDTTAHLFDMRGLGNSLDILKRIYGYSAFRGQQQAVIEHVAEGGDAVVLFPTGAGK
SLCFQIPALCRKGVGIVVSPLIALMRDQVEALKQLGIRAAALNSSLTRDEAIAVRRALSA
DALDLLYVTPERAVTDGFAEMIGDMDIALFAIDEAHCVSQWGHDFRPEYRGLDCLASRFP
GVPRVALTATADPHTRDDMIERLGLNGARVFTSSFDRPNIAYEIVERDQPRQQLLRFLSR
FKDSSGIVYCLSRAKVEDTADWLNEQGIRALPYHAGMDRSLRDAHQDAFLKEENLCLVAT
VAFGMGIDKPNVRYVAHLDLPGSVEAYYQETGRAGRDGLPSEVWMAYGMADVIQRRRMID
EGGAPDEIKRIERSKLNALLAICETVGCRRQAILAHFGEAHPGRCSHCDTCLKPVETWNG
TEAAIKALAAVYRTGERFGTGHVIDVLIGTVNEKTKRFGHVDIPVFGAGKDLPARTWQSV
FRQLLAAGLITVDHAAFGALKLEPEARSVFKRKRQVFFRKDRPGSGKAARGQKPAARERS
DLAGSDLELFERLRAERSSIAKDLNVPPYVVFPDTTLIALAKRRPRDFDDLLDIPGIGES
KRERYGEAFLAVIEAFEDGG
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaagtcacgacaccaccgcgcacctgttcgacatgcgaggcctcggaaattct
ctcgatatcctcaagcgcatctatggctattccgccttccgcggtcagcagcaggcggtc
atcgaacacgtggcggaaggcggcgatgcggtcgtgcttttcccgaccggggcgggcaag
tcgctctgcttccagattccggcgctgtgtcgcaaaggcgtcggcatcgtcgtctcgccg
ctgatcgcgctgatgcgggaccaggtggaggcgctgaagcagctcggcattcgcgccgcc
gcgcttaactcttccctgacccgcgacgaggcaatcgccgtccgccgggcgctctcggcg
gacgccctggacctgctctacgtgacgccggagcgtgcggtgaccgacgggttcgccgag
atgatcggcgacatggacatcgccctcttcgccatcgacgaggcgcactgcgtgtcgcaa
tgggggcacgattttcgccccgaatatcgcggcctcgattgccttgcgtcgcgctttccc
ggcgtgccgcgcgttgcgctgacggccaccgccgacccgcatacgcgcgacgacatgatc
gagcgactggggctcaatggcgcacgggttttcacctccagcttcgaccggccgaatatc
gcctacgagatcgtcgaacgcgaccagccgcgccaacagctcctgcgtttcctgtcgcgc
ttcaaggactcgagcggcatcgtctattgcctgtcgcgcgccaaggtcgaggacaccgcc
gattggctgaacgaacaaggcatccgcgcgcttccctatcatgccggtatggatcgatct
ttgcgcgatgcacatcaggatgccttccttaaagaggaaaatctctgcctcgtcgccacc
gttgccttcggaatggggatcgacaagccgaacgtgcgctatgtggcgcatctcgacctg
ccgggttcggtcgaggcctattaccaggagacgggaagggcggggcgtgacggactgccg
tcggaggtctggatggcctatggcatggccgatgtcatccagcgccggcgcatgatcgac
gagggcggcgcgcccgacgagatcaagcgcatcgaacggtccaagctcaacgccctgctg
gcgatctgcgaaacggtcggttgccggcgccaggcgatccttgcgcatttcggcgaggcg
catcccggccgctgcagccactgcgacacctgcctgaagccggtcgaaacctggaacggc
acggaagcggcgatcaaggcactcgccgccgtctaccggaccggcgagcggttcggcacc
ggccacgtcatcgacgtgctgatcgggaccgtcaatgaaaagaccaagcgcttcggccat
gtcgacataccggtcttcggtgccggcaaggacctgccggcgcgaacctggcaatcggtc
ttccggcaattgctggccgcggggctgatcacggtggatcatgccgccttcggggccttg
aagctcgagccggaggcacgaagtgtcttcaagcgcaagcgccaggtgttcttccgcaag
gatcggcccggttccggcaaggcggcgcgcggccagaagccggcggctcgtgagcgctcc
gaccttgccggctccgatctcgagcttttcgaacgcctgcgcgccgagcggtcctcgatc
gccaaggacttgaacgtcccgccctatgtcgtgttcccggacacgaccttgatcgcgctc
gccaaacggcgaccccgcgacttcgacgatctcctcgacatacccggcatcggcgagagc
aagcgggagaggtatggcgaggcttttctggcggtaatcgaagcgttcgaggatggtggc
tga
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