Sinorhizobium fredii USDA 257: USDA257_c47620
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Entry
USDA257_c47620 CDS
T02188
Symbol
rhlE2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
USDA257_c47620 (rhlE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfd03019
]
USDA257_c47620 (rhlE2)
Enzymes [BR:
sfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
USDA257_c47620 (rhlE2)
Messenger RNA biogenesis [BR:
sfd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
USDA257_c47620 (rhlE2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AFL53298
UniProt:
I3XBP2
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All DBs
Position
4935127..4936668
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AA seq
513 aa
AA seq
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MSTFKELGLSQDILATLSANGFEKPTPIQTQAIPLVLKGHDLIGLAQTGTGKTAAFGLPM
IEKLVADGKRPDPRNIRALVLAPTRELVNQIATNLKLFVKKSPLKVGVVVGGVSINKQTE
QLARGVDILVATPGRLLDLIARKAVTLTQGRYLVLDEADQMLDLGFIHDLRKISKLVPKN
RQTLLFSATMPKLIAELAGEYLTDPVKVEVTPPGKAADKVEQYVHFVPGKDLKTTILKRT
LTDNPDGLSLVFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVL
VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRD
IEKLMGIQIAVASGDAPADQARPSKGRGGRGNGQQRGNGGGQHRGNGGGQHRGNGDGQRP
KRPAREPAVAGGFAGDELLRDDRPQKSERRDHRAAAPGHHDGRSEGNRNHENRKHHGRPG
AKQEGRRHGDGQPGNRGERGQGVRRADNGGRQG
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
ttgtccactttcaaagagctcggtctctcgcaggacatcctggcgaccctctccgccaat
ggcttcgagaagccgacgcccatccagacgcaggccattccgcttgtcctcaagggtcat
gacctcatcggtctcgcccagacgggcaccggcaagacggccgcctttggcctgccgatg
atcgagaagctcgtcgcggacggcaagcgcccggacccgcgcaacatccgcgccctcgtg
cttgcccccacccgcgaactcgtcaaccagatcgccaccaacctcaagctcttcgtgaag
aagagcccgctgaaggtcggcgtcgtggtcggcggcgtctcgatcaacaagcaaaccgaa
caactggcccgcggcgtcgacattctcgtcgcaacacctggccgcctgctcgaccttatt
gcccgtaaggccgtgacgctgacgcagggccgctacctcgtgctcgacgaggccgaccag
atgctcgacctcggcttcatccacgacctgcgcaagatttcgaagctggtaccgaagaac
cgccagacgctgctcttctcggcaactatgccgaaactgatcgccgagcttgccggcgag
tacctgaccgatccggtcaaggtcgaggtcacgcctcccggcaaggccgccgacaaggtt
gagcaatatgtccatttcgttccgggcaaggacctgaaaacgacgatcctgaagcggacg
ctgaccgacaatcccgatggtctgtcactggtcttcagccgcacgaagcacggcgccgag
aagctgatgaagcatctggaccatgtcggcttcaaggccgcctcgatccacggcaacaag
agccagggtcagcgcgagcgggcactgaaggcgttccgcgacggcgagatccgcgtcctc
gtcgcgaccgatgtcgccgcccgtggcatcgacattccgggcgtcacccatgtctacaac
tacgatctgccggaagttccggatgcctatgtgcatcgcatcggccgcaccgcccgcaac
ggccgcgacggcatcgcgatcgccttctgtgcgccggacgaaatccgcctgctgcgcgat
atcgaaaagctgatgggcatccagatcgccgtcgccagcggcgatgcgccggccgaccag
gcccgcccctccaagggtcgcggaggtcgcggcaatggccagcagcgcggcaatggtggt
ggtcaacatcgcggcaatggcggtggtcagcatcgcggcaatggcgatggccagcgcccg
aaacggcccgcgcgtgaaccggccgtggccggtgggtttgccggtgacgagctactccgc
gacgaccgcccgcagaagagcgagcgccgcgaccatcgcgccgcagcccccgggcatcac
gacggccggtcggaaggcaaccgcaaccacgagaaccggaagcaccatggccgcccgggc
gcgaagcaagagggacgccgtcatggcgacggccagcccggcaatcggggcgagcgtggt
caaggcgtgcgccgcgcagacaatggcggccggcagggctga
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