Sinorhizobium fredii USDA 257: USDA257_c50890
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Entry
USDA257_c50890 CDS
T02188
Symbol
yafK
Name
(GenBank) putative L,D-transpeptidase YafK
Organism
sfd
Sinorhizobium fredii USDA 257
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Gene cluster
GFIT
Motif
Pfam:
YkuD
HPS6
Motif
Other DBs
NCBI-ProteinID:
AFL53615
UniProt:
I3XCK9
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Position
5277197..5278624
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AA seq
475 aa
AA seq
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MRFRNLAIITAVAAALAGCTNETLDSVNLSSVKNKTEYQLSSKMVSKMRELGMQKTSPIL
LRIFKEEGTLEVWKANASSRFQLLKSYKICAWSGKLGPKVKEGDRQAPEGFYPLYPHQMN
PNSNYYLAINTGFPNTYDKANGRSGTHLMIHGACSSSGCYSMTDEQIIEIFALARDAFKG
GQENVQLQAFPFRMTAENMARHRDNSNIEFWKMLKAGYDQFEVTKRPPQVNVCERKYVFN
QQSDGSFNPAGQCPAMSTPPALQVAMANFDKDYQRDYQKALKKYDGMVWYEPSEAERKAI
VAEQRKGRELAYAPTGTSLDAGKLMKVSDLEKRLAEQKEAQEAKQAALIQKEALEKATRE
GKAVPVPQQSPIERPVQQAALQTAPVQKSFWKLFSKSEPEAQATAPVNAAPAEQSAAQPS
AQPPAEQRPAAGQQRAATPAAAPNPQVATAPVAGGDAAPAEQPPRKRPFWKIWGN
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttcaggaatcttgcaatcatcaccgccgtcgcagccgcgcttgccgggtgcacc
aacgaaacgctcgattcggtcaacctctcctccgtcaagaacaagacggaataccagctt
tccagcaagatggtcagcaagatgagagagttggggatgcagaagacatccccgatcctg
ttgcgcatcttcaaggaggagggaacgctcgaggtatggaaggcgaatgcgtcgagccgc
ttccagcttctgaagagctataagatctgcgcctggtccggcaagctcggccccaaggtg
aaggagggcgatcgtcaggcgccggagggattctacccgctctatccgcaccagatgaat
cccaactcgaactactatctggcgatcaataccggttttcccaacacttatgacaaggcg
aacggccgcagcggcacgcacctgatgatccacggcgcctgctcgtcttcgggctgctat
tcgatgaccgacgagcagatcatcgagatcttcgcgctcgcccgcgatgcgttcaagggc
ggccaggaaaacgtccagctgcaggccttccccttccggatgacagcggagaacatggcc
cgccaccgcgacaattcgaacatcgaattctggaagatgctgaaggccggctacgaccag
ttcgaagtgaccaagcgtccgccgcaggtcaatgtctgcgagaggaaatacgtcttcaac
cagcagagcgacggcagcttcaatccggccggccagtgccccgccatgtcgacgccgcca
gccttgcaagtagccatggccaatttcgacaaggattatcagcgcgactatcaaaaggcg
ctgaagaaatacgacggcatggtctggtatgaaccgagcgaagcggagcgcaaggcgatc
gttgccgagcaacgcaagggccgcgagcttgcctatgcgccgaccggcacgtcgctcgac
gccggcaagctgatgaaggtgagcgatctcgaaaagcggcttgccgagcagaaggaggcc
caagaggccaagcaggcggcgctgatccagaaggaggcgctggagaaggcgacccgcgaa
ggcaaggccgtgcccgtcccgcagcagagcccgatcgaacgacccgttcaacaggcggcg
ctgcagacggcgcctgtccagaagtccttctggaagctgttctcgaagagcgaacccgag
gcgcaggcgacggcacccgtcaacgcggcacctgccgagcagagtgcggcccaaccgtcg
gctcagccgcccgccgagcagcgacctgccgctggtcagcagcgggcagccacgccggcg
gccgcgcccaatccgcaggtggccaccgcccctgtggccggcggagatgcggcaccggcg
gagcagccgccgaggaagcgcccgttctggaagatctggggcaattga
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