Sinorhizobium fredii USDA 257: USDA257_c53200
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Entry
USDA257_c53200 CDS
T02188
Symbol
soxA
Name
(GenBank) sarcosine oxidase subunit alpha
KO
K00302
sarcosine oxidase, subunit alpha [EC:
1.5.3.24
1.5.3.1
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd00260
Glycine, serine and threonine metabolism
sfd01100
Metabolic pathways
Module
sfd_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09100 Metabolism
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
USDA257_c53200 (soxA)
Enzymes [BR:
sfd01000
]
1. Oxidoreductases
1.5 Acting on the CH-NH group of donors
1.5.3 With oxygen as acceptor
1.5.3.1 sarcosine oxidase (formaldehyde-forming)
USDA257_c53200 (soxA)
1.5.3.24 sarcosine oxidase (5,10-methylenetetrahydrofolate-forming)
USDA257_c53200 (soxA)
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Gene cluster
GFIT
Motif
Pfam:
GCV_T
SO_alpha_A3
Fer2_4
GCV_T_C
Pyr_redox_2
DAO
FAD_oxidored
FAD_binding_2
NAD_binding_8
GIDA
AlaDh_PNT_C
HI0933_like
Pyr_redox_3
Pyr_redox
Thi4
FAD_binding_3
Lycopene_cycl
Fer2_BFD
3HCDH_N
Motif
Other DBs
NCBI-ProteinID:
AFL53844
UniProt:
I3XD88
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All DBs
Position
complement(5526933..5529926)
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AA seq
997 aa
AA seq
DB search
MSGVNRISGAGRLTPARTARFTFDGRTLTALEGDTLASALIANDIHLVGRSFKYHRPRGI
LSAGAEEPNALLDVSRDAARRQPNVRATVQEVFDGMKVSSQNRWPSLAFDIGGFNDLLSP
FFAAGFYYKTFMWPKAAWHSLYEPFIRRAAGLGVAPTEADPDHYASRYGHCDVLVVGAGV
AGLAAALAAAKAGAKVILCDEQPEVGGALRYDSGAVVDGKPGYAWAQETGKALAGMDNVT
VLTRTTGFGYYNHNFVGLVERVTDHLAAPDKALPRERLWQIRAKKVILANGAIERHMVFA
NNDRPGIMLASAGRTYLNHFGVAVGKKVAIYTAHDSAYEAAFDLKRAGVGVPVIVDCRER
PSEAVLAEARHLGIEVLTGHSVVNTTGKLRIASITVARNGGSGARKITVDALLVSAGWTP
SVHLFSQSRGKVKFDAATERFLPGTYAQDCLSIGACNGTDDIQATIDEALAAGELAARAA
GAEGGAQVALNGQNAFEWTGGMTGAAEGAGPDTTVKAFIDFQHDVCAKDIRLAVREGMHS
VEHIKRFTTNGMASDQGKLSNMHGLAIAAEALGKGIPEVGLTTFRQPYTPVTFGAIVSHS
RGGLFDPARKTPMHAWEEAQGAEFEDVGNWKRAWFYPKAGESMHEAVARECKTVREVAGV
FDASTLGKIEVVGPDAAKFLNLMYTNAWDNLKPGRCRYGIMLRDDGFVYDDGVVGRLAED
RFHVTTTTGGAPRVLHHMEDYLQTEFPNLKVWLTSTTEQWAVIAVQGPKAREIIAPLVEG
IDLSNEALPHMSVAEGRICGIPTRLFRMSFTGELGFEVNVPADYGQAVWEAIWARAEPMG
ACAYGTETMHVLRAEKGYIIVGQDTDGTLTPHDAGLSWAVSKKKRDFVGIRGLKRPDLVK
DGRKQLVGLLTKDPKVVLEEGAQIVADPNQPKPMTMLGHVTSSYWSPNCGRSIALAVVAG
GQARLGETLYVPMADRTIAVEVSDMVFFDKEGGRLHG
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgagcggggtcaatcgcatttcgggggcgggacgcctgacgccggcgcgcaccgcccgg
ttcaccttcgacggccgcacgctgacggcgctcgagggcgatacgctcgcctcggcgctg
atcgccaacgacatccatctcgtcggccggtcgttcaagtatcaccgtccgcgcggcatt
ctttccgccggtgcggaagagccgaacgcgcttctcgatgtctctcgtgacgcagcgcgg
cggcagccgaacgtccgcgccaccgtgcaggaagtcttcgacggcatgaaggtctcctcg
cagaaccgctggccgtcgctcgccttcgatatcggtggcttcaacgatctcctgtcgccc
ttcttcgccgccggcttctactacaagaccttcatgtggccgaaggcggcgtggcacagc
ctctacgagccgttcatccgccgcgccgccggtcttggcgttgctccgacggaagcggat
ccggatcactatgccagccgctacggccattgcgacgtgctggtggtcggcgccggcgta
gccggtctcgcggccgcactcgcggcggcaaaggccggcgcgaaggtcatcctgtgcgac
gaacagccggaagtcggcggggcgctccgatacgattccggtgccgtcgtcgacggcaag
ccgggttatgcctgggcgcaggagaccggcaaggcgcttgccggcatggacaacgtgacc
gtgctgacgcgcacgacgggcttcggctattacaaccacaacttcgtcggactggtcgag
cgggtgaccgaccatctcgccgcgccggacaaggcgctgccgcgcgagcggctctggcag
atacgcgccaagaaggtcatcctcgccaacggcgcgatcgagcgccacatggtcttcgca
aacaacgaccggccgggcatcatgctggcttcggcggggcgcacctatctcaaccacttc
ggcgtcgcggtcggcaagaaggtcgccatctacacggcgcacgattccgcctacgaggcc
gccttcgacctcaagagggcgggcgttggcgtgccggtgatcgtcgattgccgcgaacgg
ccgagcgaagcagtgctggcggaggcgagacacctcggcatcgaagtgctgacgggtcac
tccgtcgtcaacaccacgggcaagcttcggatcgcctcgatcaccgtcgcccgcaacggc
ggcagcggagcgcgaaagatcaccgtagatgcgctgctcgtctcggccggctggacgccg
tccgtgcatctcttctcgcaatcgcgcggcaaggtgaagttcgatgcggcgacagagcgc
ttcctgcctggcacctatgcgcaggactgcctctcgatcggcgcctgcaacggcaccgac
gatatccaggcgacgatcgatgaggcgcttgccgccggcgaactggcggcccgggccgcc
ggcgcagaaggtggtgcgcaggtcgcgctcaacggtcagaacgcctttgaatggactggc
ggcatgaccggggctgccgaaggggcaggaccagacacgaccgtcaaggccttcatcgac
ttccagcatgacgtctgcgccaaggacattcgccttgccgtgcgcgagggcatgcactcg
gtggagcatatcaagcgcttcaccaccaacggcatggcctccgaccagggcaagctctcc
aacatgcacgggctcgcgatcgcagcggaagcgctcggcaaggggattcccgaggtgggg
ctgacgaccttccgccagccctatacgccggtaaccttcggcgcgatcgtcagccactcg
cgcggcggcctgttcgatccggcccgcaagacgcctatgcatgcctgggaggaggcgcag
ggcgccgagttcgaggatgtcggcaactggaagcgcgcctggttctatccaaaggcgggc
gagagcatgcatgaggcggtcgcccgcgagtgcaagaccgtccgcgaggtggccggcgtc
ttcgatgcgtcgacgctcggcaagatcgaggtggtcggccccgatgccgccaagttcctc
aatctcatgtacacgaacgcctgggacaatctgaagcccggccgctgccgctacggaatc
atgctgcgcgacgacggtttcgtctatgacgacggagtcgtcggccggctggccgaggat
cgcttccatgtgacgacgacgaccggcggcgcgccgcgcgtcctgcaccatatggaagac
tatctccagacggagttcccaaacctcaaggtgtggctaacctcgacgacggagcaatgg
gcggttattgccgtccagggtccgaaggcacgcgaaatcatcgcaccgctcgtcgaaggc
atcgatctctcgaacgaggccctgccgcacatgagcgtcgccgaagggcgaatctgcggc
attccgacccggctcttccgcatgtccttcaccggcgagctcggcttcgaggtcaatgtg
ccggcggactacggtcaggcggtctgggaggcgatctgggcacgggccgagccgatgggc
gcctgcgcctacggtaccgaaacgatgcacgtgctgcgtgccgagaagggctacatcatc
gtcggccaggataccgacggcaccctcacgccccacgatgccggcctctcctgggcggtt
tcgaagaagaagcgggacttcgtcggcattcgcggcctgaagcggcccgacctcgtcaag
gacggccgcaagcaactcgtcggcctgctcaccaaggatccgaaggtggtgctggaggaa
ggcgcgcagatcgtcgccgaccccaatcagccgaaaccgatgaccatgctcggccatgtg
acctcgtcctactggtcgccaaattgcggtcgctcgatcgcgctggccgtggtcgccggc
ggtcaggcccgcctcggtgagacgctctacgtgccgatggcggaccggacgatcgccgtc
gaagtgagcgacatggtgttctttgacaaggaaggaggtcgcctccatggctga
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