Sinorhizobium fredii USDA 257: USDA257_c54950
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Entry
USDA257_c54950 CDS
T02188
Name
(GenBank) TOP1E: DNA topoisomerase 1B
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sfd
Sinorhizobium fredii USDA 257
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfd03032
]
USDA257_c54950
03400 DNA repair and recombination proteins [BR:
sfd03400
]
USDA257_c54950
Enzymes [BR:
sfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
USDA257_c54950
DNA replication proteins [BR:
sfd03032
]
Prokaryotic type
DNA Topoisomerases
USDA257_c54950
DNA repair and recombination proteins [BR:
sfd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
USDA257_c54950
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
iRhom1-2_N
Motif
Other DBs
NCBI-ProteinID:
AFL54010
UniProt:
I3XDQ4
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All DBs
Position
5708178..5709353
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AA seq
391 aa
AA seq
DB search
MPLQVSSNSARHAAAMRDRSGAGRSRNGRDVAAGEGPAKESGLVYVSDSVPGIRRQRSGK
GFVYRLPDGSILTDPVVKARIASLGLPPAYENVWICLDENGHLQATGYDARGRKQYRYHT
EWQVQRSGDKFAQLLLFGKALPRIRRTTRRHMEGGAGDARTVLAALVALLDEAHLRTGSP
AYVEANSTYGATTLLKRHLRLLDGYIELRFIAKGGKRVQRRLRRPKLQRLLENIADLPGR
QLFVWRDDNDVLRPVDSGRLNRYLAEIAGFSVSAKTFRTWAGSVAAFTAAREALERGERP
TVKTMCEAAAAALCNTPAICRKSYIHPYVIALADTGSAVSAKQLRRRGRANPELRVEEAR
MLNFLVRAARSETKAAATMNGITAGPSPAVI
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgcaagtcagttccaattcggcccgccatgcggcggcgatgcgtgatcgatcc
ggcgccgggcgcagccgcaatgggcgcgatgtagcggcaggcgaaggtcccgcgaaggaa
agcgggctcgtctatgtcagcgattcggtgccgggcatcaggcggcaacgctccggcaag
gggttcgtctaccggctgccggacggctcgatcctgaccgaccccgtcgtgaaggcccgt
atcgcatcgctgggcctgccgccggcctacgagaacgtgtggatttgcctggacgagaac
gggcacctgcaggcgaccggctatgacgcgcgcggtcgaaagcaataccgctatcacacg
gaatggcaggtgcagcggagcggcgacaagttcgctcagctccttctcttcggcaaggcg
ctgccgaggatccggcgcacgacccgccgccacatggaaggaggagccggcgacgcacgg
acggtgctcgccgctctggtcgccttgctcgacgaagcgcatctgcgaaccggaagtccc
gcctatgtcgaggcgaattcgacctatggcgcgacgacgctgttgaaacgccatttgcgg
ctcctcgacggttacatagagctgcggtttatcgccaagggaggcaaacgcgtgcagcgg
cggctgcggcgcccgaaactgcagcgcctgctcgagaacatcgccgacctgccgggacgg
cagctcttcgtgtggagggacgacaacgatgtcctgcgcccggtcgactcggggcgtctc
aaccgctatctggcggagattgccggcttctcggtttcggccaagacgttccggacttgg
gcgggcagcgttgccgccttcacggcagcacgcgaagcactggagagaggcgagcgcccg
accgtcaaaacgatgtgcgaggcggctgccgcggctctctgcaacacgccggctatctgc
cgcaaaagctacatccatccgtatgtcatcgctctcgcggataccggctctgctgtctcc
gccaaacagctgcgccgccgcggacgcgcaaaccctgagctacgggtggaggaagcgcgc
atgctcaattttcttgtgcgcgccgcacgttcggagaccaaggcagcggccacgatgaac
ggaataacggcgggaccgagccccgccgttatctga
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