Sinorhizobium fredii USDA 257: USDA257_c55650
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Entry
USDA257_c55650 CDS
T02188
Symbol
priA
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
USDA257_c55650 (priA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfd03400
]
USDA257_c55650 (priA)
Enzymes [BR:
sfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
USDA257_c55650 (priA)
DNA repair and recombination proteins [BR:
sfd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
USDA257_c55650 (priA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
PriA_C
DEAD
ResIII
Zn_ribbon_PriA
Helicase_C
Zn_ribbon_6
AAA_30
AAA_22
EEP_ig-like
Zn_ribbon_Com
DUF7129
Motif
Other DBs
NCBI-ProteinID:
AFL54080
UniProt:
I3XDX4
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All DBs
Position
complement(5778467..5780671)
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AA seq
734 aa
AA seq
DB search
MTLDSTDLFGALFDRRVVPVLVPMPAPRPYSYAVPEGMAVEPGSIVQVPLGPRLVVGVVW
DGLDDGTVDPKKLKEIEKVFDCPPLTCDMRAFLDWVASYTITPPGLVARMALRAPTAFDP
EPMVEALRLTERRPERMTAARERVLATASDGFSWTRSGLAHAAGVSTGVIDGLAAQGVFE
TVFMPPPPVVAVPDPDFAAPRLEGPQKEAAADLLTTVEERKFSVSLIDGVTGSGKTEVYF
EAVAATLRAGKQVLILLPEIALTASFLERFQDRFGAKPAEWHSDLAPRMREKVWRQVTTG
QVRVVAGARSALFLPFEELGLIIVDEEHDPAYKQEDRVFYNARDMAVVRGRLSGFPVVLV
SATPSVESRVNGEVGRYRPIHLPTRFGDAALPHLGIVDMRRHPPERGGFLSPVLLNQVGK
AIGRGEQSLLFLNRRGYAPLTLCRVCGHRFQCPDCSSWLVEHRFRGQIQCHHCGYSERTP
EACPECGTLDHLVACGPGVERIAEEVERHFPEARTIVLSSDLMGVKRLRLELEAIARGEA
DIVIGTQLVAKGHNFPMMTLVGIVDADLGLANGDPRAAERTFQLLSQVTGRAGRTGLKSL
GLLQTYQPQHPVMQAIVSGDSDAFYDRETHERERAALPPFGRLASIIVSADTRSDAEGHA
RALRNAAPRVDGISVLGPAEAPLALIRGRHRFRLLVHGRRNSDMQSFVKAMIAGGPKERG
SISVQLDVDPQSFL
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgacgcttgattcaaccgatttattcggcgctctcttcgaccgccgcgtggtgcccgtc
ctggtgccgatgccggcaccgaggccctattcctatgcggtgccagagggcatggcggtc
gagccgggctcgatcgtgcaggtgccgctcgggccgcggcttgtcgtcggcgtcgtctgg
gacggcctcgacgacggcacagtcgatccgaagaagctgaaggagatcgagaaggtcttc
gactgcccgccgctcacctgcgacatgcgcgcctttctcgattgggtggcgtcctatacg
atcacgccacctggcctcgtcgcccgcatggcgctgcgcgcgccgaccgccttcgatccc
gagccgatggtcgaagccttgcgtctgaccgagcggcgccctgaacggatgaccgccgcg
cgcgagcgcgtccttgcaacggccagcgatggcttctcctggacccgctccggccttgcc
cacgcagccggtgtttccacgggagtgatcgacggacttgccgcacagggcgtgttcgaa
acggtgttcatgccgccgccgccggtggtcgccgtacccgatccggatttcgcggcgccg
cgcctcgaggggccgcagaaggaggccgccgccgacctgctcacgaccgtcgaagaaaga
aagttttcggtctcgctgatcgatggagtcaccggttccggcaagaccgaggtctatttc
gaggcggtcgccgcgacgcttagggccggcaagcaggtgctgatcctgcttccggagatc
gcgctcaccgccagtttcctcgagcgtttccaggatcgcttcggcgccaagccggcggag
tggcactccgacctcgcgccgcgcatgcgcgaaaaagtgtggcggcaggtgacgaccggc
caggtgcgcgtcgtcgccggcgcccgctcggcgctgtttctgcccttcgaggagctcggc
ctgatcatcgtcgacgaggagcacgaccctgcctacaagcaggaggaccgggtcttctac
aatgcccgcgacatggcagtggtgcgcgggcggctcagcggctttccggtcgtactcgtt
tccgcaacgccttcagtcgagagccgggtgaacggcgaggtcggccgctacaggccgatc
cacctgccgacccgtttcggcgatgcggcgctgccgcatctcggcatcgtcgacatgcgc
cgccatccaccggagcgcggcggctttctctcgccggtgctcttgaaccaggtcggcaag
gcgatcggccgcggcgagcagtcactcctgttcctcaaccgccgcggctacgcgccgctg
acgctctgccgcgtctgcggtcatcgcttccagtgcccggactgctcgagctggttggtc
gagcaccgctttcgcggccagatccagtgccatcattgcggttattcggaacgcaccccc
gaggcctgcccggaatgcggcacgctcgatcacctggtcgcctgcggcccgggggtcgaa
cgcatcgccgaggaggtcgagcgacattttcccgaagcccgcaccatcgtcctctcctcc
gacctgatgggcgtcaagcggctaaggctggaactggaagcaatcgcccgcggcgaggcg
gatatcgtcattggcacgcagctcgtcgccaaggggcacaatttcccgatgatgacgctg
gtcggcatcgtcgatgccgatctcggccttgccaatggcgatcctcgtgcggccgagcgg
acctttcaattgctgtcgcaggtgaccgggcgcgcgggacgaacgggcctgaagagcctc
ggtctgttgcagacctatcagccgcagcatccggtaatgcaggcgatcgtgtctggtgat
tcggacgccttctacgaccgcgagacccacgagcgggaacgggcggcgctgccgcccttc
ggcaggcttgcctcgatcatcgtctctgccgacacgcgcagcgatgccgaggggcatgca
cgcgccttgcgcaacgccgctccgcgcgtcgacggcatttcggtcctcgggccggcggaa
gcgccgctcgcactgatccgcggccgccaccgattccggctgcttgtccacggacggcgc
aacagcgacatgcagtccttcgtgaaggcgatgattgcgggggggccgaaagagcgcgga
tcgatcagcgtgcagctcgatgtcgatccgcagagttttctgtga
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