Sinorhizobium fredii USDA 257: USDA257_c56610
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Entry
USDA257_c56610 CDS
T02188
Symbol
groL4
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
USDA257_c56610 (groL4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfd03019
]
USDA257_c56610 (groL4)
03110 Chaperones and folding catalysts [BR:
sfd03110
]
USDA257_c56610 (groL4)
03029 Mitochondrial biogenesis [BR:
sfd03029
]
USDA257_c56610 (groL4)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfd04147
]
USDA257_c56610 (groL4)
Enzymes [BR:
sfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
USDA257_c56610 (groL4)
Messenger RNA biogenesis [BR:
sfd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
USDA257_c56610 (groL4)
Chaperones and folding catalysts [BR:
sfd03110
]
Heat shock proteins
HSP60 / Chaperonin
USDA257_c56610 (groL4)
Mitochondrial biogenesis [BR:
sfd03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
USDA257_c56610 (groL4)
Exosome [BR:
sfd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
USDA257_c56610 (groL4)
Exosomal proteins of other body fluids (saliva and urine)
USDA257_c56610 (groL4)
Exosomal proteins of breast cancer cells
USDA257_c56610 (groL4)
Exosomal proteins of colorectal cancer cells
USDA257_c56610 (groL4)
Exosomal proteins of bladder cancer cells
USDA257_c56610 (groL4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
AFL54174
UniProt:
I3XE68
LinkDB
All DBs
Position
complement(5884472..5886112)
Genome browser
AA seq
546 aa
AA seq
DB search
MTAKEIRLAFRARDSMLHGIDTLARAVAVTLGPRGRNVAINRSFGTKITKDGVTVAREIE
LEDRFEDMGVQLLRQVAIKTSYQAGDGTTTAVVLADAILRGGVRAVTAGMNPMDLKRGID
RAVEAVVAELKQNARAVASNVEITQVATISANGDREIGHIIAEAMAEVGNAGVIMIEEGR
SLETESEVITGIQFDRSYISPYFVTNRDKMRVEMEEALILVCEKKLSSLSEILPLLEKVV
QADKPLLIIAEDIEAEVRAALVINRLRGGLKVAAVKAPAYGELREAIMQDIALLTGGTVI
SEDLGLKLESISLDRLGRARKIRVDKQNTTIAEGGGSSADIAGRIAAIKAQLDLSTSDFD
REKLQERLARLSAGIAVIRVGGATESEVREKKDRIRNAMHATRAAVEEGILPGGGIALLR
ASSAIRTLKAETLDQQAGINVVKEAITWPAKQIASNAGVDGSLVAAQILQRDDYGWGYDA
QTGTFRDLLEAGIVDPAKVVRTALQGAASMAGLMIMTEAMVAEVPGPPPPELPGHHDHED
NLDIDF
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgacggccaaggagatcaggctcgctttccgggcgcgcgacagcatgctgcatggcatc
gacacgctcgcgcgtgctgtcgctgtcacgcttgggccgcgcgggcgaaacgtagccatc
aatcgatcctttggcacgaaaatcaccaaggacggtgtgacggtcgcgagggaaatcgaa
ctcgaggaccgattcgaggacatgggcgttcagttgctcaggcaggtcgccatcaaaacc
tcgtatcaggcgggcgacggaacgacgacagcggtggtcctcgccgacgcaatcctcagg
ggcggtgtccgggcggtcactgccggcatgaacccgatggacctgaagcgcgggatcgat
cgtgcggtcgaggcggtcgtcgcggagttgaaacagaatgcaagagctgtcgcttcaaat
gtcgagatcacgcaggtcgctacgatttcggccaatggagatcgagagatcggccacatc
atcgccgaggctatggcggaggtcggcaacgccggcgtgatcatgatcgaggaagggaga
tcgctcgaaaccgaaagcgaagtcatcaccggcattcagttcgaccgcagctatatctct
ccctatttcgtcaccaatcgagacaaaatgcgggtggaaatggaagaggcacttatcctc
gtttgcgagaagaagctgtctagccttagcgaaattttgccgcttttggaaaaggtcgta
caggctgacaagccacttctcatcatcgccgaagacatcgaggctgaagtcagggcggcg
cttgttatcaacaggctgcgtggcggcctcaaagtggctgctgtcaaggcgccggcctac
ggcgagctccgcgaggcgatcatgcaagacattgcactgctcaccggcggaacggttatc
tcggaggatctaggtcttaagctcgagagcatatcgctcgaccgtctcggacgtgcccgg
aagattagagtcgacaaacagaataccacaatcgcggaaggaggcgggtcaagcgcggac
atcgctgggcggatcgctgcgatcaaggcgcagcttgacctgtccacatccgactttgat
cgggaaaagcttcaggagcggctggcgcggctctccgccgggattgccgtgatccgggtt
ggcggcgcgaccgagtcggaggttagggagaagaaggaccgtatccgcaacgccatgcat
gccactcgagccgccgtagaggagggtattctgcccgggggcggcatcgctctcttgcgc
gcaagcagtgcaatccggactttgaaggctgagaccctcgaccagcaggccggcatcaac
gtcgtcaaggaagcgataacctggccggcgaaacagattgcgtctaatgcgggcgtggat
ggctcgctcgtcgccgcccaaattctccaaagggacgactacggctggggctacgatgcg
caaaccggaacgtttcgcgatctgttggaggcgggcatcgtcgatcccgccaaggtcgtg
cgcacagcgcttcagggtgccgcctcaatggccggtctaatgattatgactgaggccatg
gtggccgaggtgcctggaccgccgccgcccgagcttcccggccatcacgatcacgaggac
aatctcgacattgatttctag
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