Sinorhizobium fredii USDA 257: USDA257_c57810
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Entry
USDA257_c57810 CDS
T02188
Symbol
xthA3
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
USDA257_c57810 (xthA3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfd03400
]
USDA257_c57810 (xthA3)
Enzymes [BR:
sfd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
USDA257_c57810 (xthA3)
DNA repair and recombination proteins [BR:
sfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
USDA257_c57810 (xthA3)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
AFL54292
UniProt:
I3XEI6
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All DBs
Position
complement(5998448..5999254)
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AA seq
268 aa
AA seq
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MTLSIATWNINSVRLRMPLVEHLLATWQPDILCLQETKCPDDQFPSAPLKKLGYQYIEMH
GQKGYHGVATISRLPLHELADRRDYCGVGDARHLSVVFQAGGKTVRLHNFYVPAGGDEPD
RTINPKFGHKLDFVDEMKLLHAEAEAGISSILVGDLNIAPLERDVWSHKQLLRIVSHTPI
ETDGLTTVMTGGAWVDLMRQHTPPPERLYTWWSYRAKDWAAADRGRRLDHIWSSADLAAK
LVRVDILREARGWERPSDHVPVIAHFEL
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgacgctttccatcgccacgtggaacatcaactccgtccgcctgcgcatgccgctggtg
gagcatttgctggcgacatggcagccggacatcctctgcctgcaggaaaccaagtgcccg
gacgaccagtttccctcggcaccgctgaagaagctcggctaccaatatatcgagatgcac
gggcagaagggctatcacggcgtggcgaccatctcgcgcctgccgttgcacgaactggcc
gatcgccgcgactattgcggtgtcggagatgcgcgccatctctccgtggtctttcaagct
ggcggcaagaccgttcgcctgcacaatttctatgtgccggccggcggcgatgaaccggac
cgcacgatcaacccgaaattcggccacaagctcgatttcgtcgacgagatgaaactcctg
cacgccgaggccgaggcgggcatctcctcgatcctggtcggcgacctcaacatcgcgccc
ctcgagcgcgacgtctggtcgcacaagcagctcctgaggatcgtcagccacacgccgatc
gaaaccgatgggctcaccacggtgatgaccggcggcgcctgggtcgacctgatgcgccag
cataccccgccgcctgaaaggctctacacctggtggagctatcgggcaaaggactgggcc
gcggccgaccgcggccgccgtctcgaccacatctggtcctctgccgacctcgccgcgaag
ctcgtccgcgtcgacatcctcagggaagcacgcggctgggagcgcccgtccgaccacgtg
ccggtgatcgctcatttcgaactttga
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