Sinorhizobium fredii USDA 257: USDA257_c60150
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Entry
USDA257_c60150 CDS
T02188
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd03030
DNA replication
sfd03410
Base excision repair
sfd03420
Nucleotide excision repair
sfd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
USDA257_c60150 (polA)
03410 Base excision repair
USDA257_c60150 (polA)
03420 Nucleotide excision repair
USDA257_c60150 (polA)
03440 Homologous recombination
USDA257_c60150 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfd03032
]
USDA257_c60150 (polA)
03400 DNA repair and recombination proteins [BR:
sfd03400
]
USDA257_c60150 (polA)
Enzymes [BR:
sfd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
USDA257_c60150 (polA)
DNA replication proteins [BR:
sfd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
USDA257_c60150 (polA)
DNA repair and recombination proteins [BR:
sfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
USDA257_c60150 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
USDA257_c60150 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH_2
HHH
IMS_HHH
Transposase_20
DUF1902
Motif
Other DBs
NCBI-ProteinID:
AFL54519
UniProt:
I3XF63
LinkDB
All DBs
Position
6272584..6275598
Genome browser
AA seq
1004 aa
AA seq
DB search
MKNGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVT
PTHFAVIFDYSSKTFRNTLYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGFEA
DDLIATYARLAEEAGAGVTIVSSDKDLMQLVTPNVSMYDSMKDKQIAIPDVIEKWGVPPE
KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRREAIIANA
EMARLSRELVTLKKDTPLDVPLEDFKLDSQDGPKLIAFLKTMEFTTLTRRVAAATDTDAE
AVEPAYVPVEWGAQAHGPDLDVGEAAGPPPTPASSSAAPPRGNAAKAAVSFLTGKGDADA
TGATPQGLAQARAEFFAKAPFDHSAYVAIRDIETLDRWIADAREAGVLGFDTETNSLDPM
RAALVGVSMAIADYGDNPLGGTIRAAYVPLIHKNGVGDLLGGGLVGNQVPVREALSRLKV
LLEDPSILKVAQNLKYAYLVMKRHGITLQSFDDTMLMSYVVDAGNGTHGMDSLSERWLGH
VPIPYKDIAGTGRASVSFDFVDIDRATAYAAEDADVTLRLWHVLKPRLAAKGLTRVYERL
ERPLIAVLAHMEERGITVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGDI
LFGKMGLPGGSKTKTGQWSTSASVLEDLAAVGHELPRKIVDWRQLTKLKSTYTDALPGFV
HPETKRVHTCYALAATTTGRLSSSEPNLQNIPVRTAEGRKIRTAFVATPGRKLVSADYSQ
IELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGIIYGI
SAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFAREHGYVETIFGRRAHYPDI
RSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEEAKLSARMLLQVHDELIFEV
EEGEIESTVPVIVSVMENAAMPALDMRVPLKVDARAAQNWDEAH
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacggtgatcatctcttcctcgtcgacggctcgggcttcatcttccgggcgttc
cacgccatcccgccgctcaaccgcaagtcggacgggcttccggtcaatgcggtcgctggc
ttctgcaacatgctctggaagcttttgaccgacgcgcgcgacacctcggtcggcgtgacg
ccgacgcatttcgcggtgatcttcgactattcctcaaaaaccttccgcaatacgctttac
gaccagtacaaggcgaaccgcacggcgccgccggaagatttgatcccccaatttgggctg
attcgccacgccacccgcgccttcaacctgccctgcatcgagaaggaaggctttgaggcc
gacgacctgatcgccacttatgcgcggcttgccgaagaggccggcgccggcgtcacgatc
gtctcctccgacaaggacctcatgcaattggtcacgcccaatgtgtcgatgtacgacagc
atgaaggacaagcaaatcgccattcccgacgtgatcgagaaatggggcgtgccgcccgaa
aagatgatcgatctccaggcaatgaccggcgattcgacggacaacgtccccggcattccg
gggatcggcccgaagaccgcggcacagctcctcgaggagtatggcgacctcgacacgctg
ctggcgcgggcgggcgagatcaaacagcagaagcggcgcgaggcgatcatcgccaatgcg
gagatggcgcgcctgtcgcgcgagctcgtcaccttgaagaaggacacgccgctcgacgtg
ccgctcgaggatttcaaactcgattcgcaggatggccccaagctcatcgccttcctgaag
acgatggaattcaccaccctgacgcgccgcgtcgcggcggcgaccgatacggatgcggag
gcggtcgagccggcgtatgtgccggtcgaatggggcgctcaagcgcacggaccggacctc
gacgtgggcgaggccgccgggccaccgccgacaccggcatcgtcgagcgctgcgccgccg
cgcggcaatgccgccaaggcggcggtttccttcctcaccggcaagggcgatgcggatgcc
actggcgcgacgccgcaggggctggcacaagcgcgcgccgaattctttgccaaggctccg
ttcgaccattcggcctatgtggcgatccgcgacatcgagaccctcgatcgctggatcgcc
gatgcgcgcgaggcgggggtgctcggtttcgacacggagacgaactccctcgacccgatg
cgcgccgccctggtcggcgtttcgatggcgatcgccgactacggcgacaatcccctgggc
ggcacgatccgcgccgcctatgtgccgctgatccacaaaaacggcgtcggcgatctgctg
ggcggcggtctcgtgggaaaccaggtgccggtgcgcgaggcgttgagccggctaaaggtt
ctgctggaggacccgtccatcctcaaggtcgcccagaacctgaaatacgcctatctcgtc
atgaagcggcacggcatcaccctgcagagcttcgacgacacgatgctgatgtcctatgtg
gtcgatgcgggcaatggcacgcacggcatggattcgctttccgaacgctggctcggccac
gtgccgatcccctacaaggacattgccggcaccggcagggcgtcggtgagcttcgatttc
gtcgatatcgacagggcgaccgcctatgcggccgaggacgcggatgtcacgcttcgcctc
tggcacgtgttgaagccgcggcttgccgccaaggggctgacgcgcgtctatgaacggctc
gaaaggccgctgatcgccgttctggcgcatatggaggagcgcggcatcaccgtcgaccgg
cagatcctctcgcgcctctccggcgagctggcgcagggggccgccgcactcgaggacgag
atctatcggctggccggcgagaccttcaccatcggctcgccgaagcagctcggcgatatc
ctgttcggcaaaatgggccttccgggcggctcgaagacgaagaccgggcaatggtcgacc
tccgcttcggtgctcgaggatcttgccgccgttggccacgagttgccgcgcaagatcgtc
gattggcgccagctcaccaagctcaaatccacctatacagacgcgctgccgggcttcgtc
catccggaaacgaaacgcgtccacacctgctatgcgcttgcggcgacgacgacagggcgg
ctttcctcgtcggagccgaacctgcagaacattccggtcaggaccgccgaggggcgcaag
atccgcaccgccttcgtcgcgacgccgggccgcaaactggtctcggctgactatagccag
atcgagctccgggtgctggcccatgtggccgatattccgcagcttcgccaagcctttgcc
gacggcgtcgacatccacgcgatgaccgcgtccgaaatgttcggcgtgcccgtcgacggc
atgccgagcgagatccgccggcgcgccaaggcgatcaatttcggcatcatctacggcatc
tccgccttcggccttgccaaccagctttcgatcgaacgctcggaggccggcgattacatc
aagcgttacttcgagcgcttcccgggcatccgcgactatatggagaacactaaggccttt
gcccgcgagcatggctatgtcgagacgatcttcggccgccgcgcccattatccggacatt
cgttcctcaaacccgtcgatgcgagccttcaacgagcgcgcttcgatcaacgccccgatc
caaggctcggccgccgacatcatccgccgcgccatggtgaagatggagccggcgctggag
gaagcgaagctttccgcccgcatgctgctgcaggtgcatgacgagttgattttcgaggtc
gaggagggggaaatcgaaagcaccgtcccggttatcgtttcggtcatggaaaatgccgcg
atgccggcgctcgacatgcgagtgccgctgaaggtggatgcccgtgcggcgcagaattgg
gacgaggcgcattaa
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integrated database retrieval system
