Shigella flexneri 2002017 (serotype Fxv): SFxv_0147
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Entry
SFxv_0147 CDS
T01883
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sfe
Shigella flexneri 2002017 (serotype Fxv)
Brite
KEGG Orthology (KO) [BR:
sfe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfe03016
]
SFxv_0147 (ligT)
Enzymes [BR:
sfe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
SFxv_0147 (ligT)
Transfer RNA biogenesis [BR:
sfe03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
SFxv_0147 (ligT)
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Ortholog
Paralog
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ADA72488
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Position
complement(152769..153512)
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AA seq
247 aa
AA seq
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MPGCASSCSGSQVDFPAPVGALNNTCGAQSRAVSNSGKTAATGNDDTKRSRGLTFFAPHC
SIAVIHNRVPHMSEPQRLFFAIDLPAEIREQIIHWRATHFPPEAGRPVAADNLHLTLAFL
GEVSAEKEKALSLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQLANMLRSQ
AARSGCFQSNRPFHPHITLLRDASEAVTFPPPGFNWSYAVTEFTLYASSFARGRTRYTPL
KRWALTQ
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgccgggatgcgccagcagttgcagcggcagccaggttgatttcccggccccggtcggc
gcacttaataatacctgcggcgcacaatcgagagcggtaagtaattcaggtaagacggca
gcaacgggcaacgacgacacaaaacgctccagagggttaacattcttcgcgccacattgt
agcatcgcggtaattcataaccgagtgcctcacatgtctgaaccgcaacgtctgttcttt
gctatcgacttacctgcagaaatccgcgaacagattatccattggcgcgccacacacttc
ccacctgaggcgggacgtccggtcgccgccgataatttgcacctgactctggcattttta
ggcgaagtgagcgcagagaaagagaaggcgctttctcttttagccggacggattcgtcaa
cctggtttcacactcacgcttgatgacgccggacaatggctgcgttcgcgtgtggtgtgg
ttagggatgcgtcagcctccacgcggcttaatccagctggcgaatatgctccgttcacag
gctgcccgcagcggttgttttcaaagcaatcgtccgtttcatccacatattaccttattg
cgcgacgccagcgaggcggtgacattcccgccgccgggttttaactggtcttatgcggtg
acggagttcaccctttacgcctcctcgtttgcccgtggacgcacacgctacacgccgcta
aaacgctgggcgctaacgcaataa
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