Shigella flexneri 2002017 (serotype Fxv): SFxv_0184
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Entry
SFxv_0184 CDS
T01883
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sfe
Shigella flexneri 2002017 (serotype Fxv)
Pathway
sfe03030
DNA replication
sfe03430
Mismatch repair
sfe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SFxv_0184 (dnaE)
03430 Mismatch repair
SFxv_0184 (dnaE)
03440 Homologous recombination
SFxv_0184 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfe03032
]
SFxv_0184 (dnaE)
03400 DNA repair and recombination proteins [BR:
sfe03400
]
SFxv_0184 (dnaE)
Enzymes [BR:
sfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SFxv_0184 (dnaE)
DNA replication proteins [BR:
sfe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SFxv_0184 (dnaE)
DNA repair and recombination proteins [BR:
sfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SFxv_0184 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ADA72523
LinkDB
All DBs
Position
195556..199038
Genome browser
AA seq
1160 aa
AA seq
DB search
MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA
GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLALLISKAYQRGYGAAGPIIDRDW
LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES
YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL
EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ
FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHESLKSVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRGLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaccacgtttcgtacacctgcgggtgcacagcgactactcgatgatcgatggc
ttggccaaaaccgcaccgctggtaaaaaaggcggcggcgttgggtatgccagcactggcg
atcaccgatttcaccaacctttgcggtctggtgaagttctacggagcgggacatggcgca
gggattaagcctatcgtcggggcagattttaatgtccagtgcgacctgctgggtgatgag
ttaacccacctgacggtactggcggcgaacaataccggctatcagaatctggcgttgctg
atctcaaaagcgtatcagcgcgggtacggtgccgccgggccgatcatcgatcgcgactgg
cttatcgaattaaacgaagggttgatccttctttccggcgggcgcatgggcgacgtcgga
cgcagtcttttgcgtggtaacagcgcgctggtagatgagtgtgtcgcgttttatgaagaa
cacttcccggatcgctattttctcgagctgatccgcaccggcaggccggatgaagaaagc
tatctgcacgcggcggtggaactggcggaagcgcgcggtttgcccgtcgtggcgactaac
gatgtgcgctttatcgacagcagcgactttgacgcacacgaaatccgcgtcgcgatccac
gacggctttaccctcgacgatcctaaacgcccgcgtaactattcgccgcagcaatatatg
cgtagcgaagaggagatgtgtgagctgtttgccgacatcccagaagcccttgccaacacc
gttgagatcgccaaacgctgtaacgtaactgtgcgtcttggtgaatacttcctgccgcag
ttcccgaccggggacatgagcaccgaagattatctggtcaagcgtgcaaaagaaggcctg
gaagagcgtctggcatttttattccctgacgaggaagaacgtcttaaacgccgcccggaa
tatgacgaacgtctggagactgaacttcaggttatcaaccagatgggcttcccgggctac
ttcctcatcgttatggaatttatccagtggtcgaaagataacggcgtaccggtagggcca
ggccgtggctccggtgcgggttcactggtggcctacgcgctgaaaatcaccgacctcgat
ccgctggaatttgacctgctgttcgaacgtttccttaacccggaacgtgtctccatgcct
gacttcgacgttgacttctgtatggagaaacgcgatcaggttatcgaacacgtggcggac
atgtacggtcgtgatgcggtatcgcagattatcaccttcggtacgatggcggcgaaagcg
gtgatccgcgacgtaggccgcgtgctggggcatccgtacggctttgtcgaccgtatctcg
aaactgatcccgcccgatccggggatgacgctggcgaaagcgtttgaagccgagccgcag
ctgccggaaatctacgaagcggatgaagaagttaaggcgctgatcgacatggcgcgcaaa
ctggaaggggtcacccgtaacgccggtaagcacgccggtggggtggttatcgcgccgacc
aaaattaccgattttgcgccgctttattgcgatgaagagggcaaacatccggtcacccag
tttgataaaagcgacgttgaatacgccggactggtgaagttcgacttccttggtttgcgt
acgctcaccatcatcaactgggcgctggagatgatcaacaagcggcgggcgaagaatggc
gagccaccgctggatatcgccgcgatcccgctggatgacaagaaaagcttcgacatgctg
caacgctcggaaaccacggcggtattccagcttgaatcgcgcggcatgaaggacctgatc
aagcgtctgcaacctgactgcttcgaagatatgatcgcactggtggcactgttccgccct
ggtccgttgcagtcagggatggtggataactttatcgaccgtaaacatggtcgtgaagag
atctcctatccggacgtgcagtggcagcatgaaagcctgaaatcggtactggagccaacc
tacggcattatcttgtatcaggaacaggtcatgcagattgcccaggtgctttctggttat
accctcggtggcgcggatatgctgcgccgtgcgatgggtaagaaaaagccggaagagatg
gctaagcagcgttctgtatttgctgaaggtgcagaaaagaacggaatcaacgccgaactg
gcgatgaaaatcttcgacctggtggagaaattcgcgggttacggatttaacaaatcgcac
tctgcggcctatgctttggtgtcatatcaaacgttatggctgaaagcgcactatccggcg
gagtttatggcggcggtaatgaccgccgatatggacaacaccgagaaggtggtgggcctg
gtggatgagtgctggcggatggggctgaaaatcctgccaccagatataaactccggtctt
taccatttccacgtcaacgacgatggcgaaatcgtgtatggtattggcgccatcaaaggg
gtaggtgaaggtccgattgaggccatcatcgaagcccgtaataaaggcggctacttccgc
gaactgtttgatctctgcgcccgtaccgacaccaaaaagttaaaccggcgggtgctggaa
aaactgatcatgtccggggcgtttgaccgtcttgggccacaccgcgcggcgctgatgaac
tcgctgggtgatgcgttaaaagcggcagatcaacacgcgaaagcggaagctatcggtcag
gccgatatgttcggcgtgctggccgaagagccggaacaaattgaacaatcctacgccagc
tgccaaccgtggccggagcaggtggtattagatggggaacgtgaaacgttaggcctgtac
ctgaccggacaccctatcaaccagtatttaaaagagattgagcgttatgtcggaggcgta
aggctgaaagacatgcacccgacagaacgtggtaaagtcatcacggctgcggggctcgtt
gttgccgcgcgggttatggtcaccaagcgcggcaatcgtatcggtatctgcacgctggat
gaccgttccgggcggctggaagtgatgttgtttactgacgccctggataaataccagcaa
ttgctggaaaaagaccgcatacttatcgtcagcggacaggtcagctttgatgacttcagc
ggtgggcttaaaatgaccgctcgcgaagtgatggatattgacgaagcccgggaaaaatat
gctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccga
ctccgtcagtctctggaaccccaccgctctgggacaattccagtacatctctactatcag
agggcggatgcacgcgcgcggttgcgttttggcgcgacgtggcgtgtctctccgagcgat
cgtttattaaacgatctccgtggcctcattggttcggagcaggtggaactggagtttgac
taa
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