Shigella flexneri 2002017 (serotype Fxv): SFxv_1239
Help
Entry
SFxv_1239 CDS
T01883
Symbol
rne
Name
(GenBank) RNase E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sfe
Shigella flexneri 2002017 (serotype Fxv)
Pathway
sfe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFxv_1239 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfe03019
]
SFxv_1239 (rne)
03009 Ribosome biogenesis [BR:
sfe03009
]
SFxv_1239 (rne)
Enzymes [BR:
sfe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SFxv_1239 (rne)
Messenger RNA biogenesis [BR:
sfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SFxv_1239 (rne)
Ribosome biogenesis [BR:
sfe03009
]
Prokaryotic type
rRNA processing factors
SFxv_1239 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ADA73484
LinkDB
All DBs
Position
complement(1186250..1189441)
Genome browser
AA seq
1063 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME
TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA
PTPAEPAATVVAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEEAKPTEQPTPKAEA
KPERQQDRRKPRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA
EVTEKARTTDEQQVPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR
KQRQLNQKVRYEQSVAEEAVVAPVVEETAAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ
QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG
KVWIRYPIVRPQDVQVEEQREQEEVQVQPMVTEVPVAAAVEPVVSAPVVEEMAEVVEAPV
PVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEHAEPMVEPQEETADADIE
EVAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEITVEHNHATAPMTRAPAPEY
VPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgttgcccttgtagat
gggcagcgtctgtatgacctggatatcgaaagtccagggcacgagcagaaaaaggcaaac
atctacaaaggtaaaatcacccgcattgaaccgagtctggaagctgcttttgttgattac
ggcgctgaacgtcacggtttcctcccactaaaagaaattgcccgcgaatatttccctgct
aactacagtgctcatggtcgtcccaacattaaagatgtgttgcgtgaaggtcaggaagtc
attgttcagatcgataaagaagagcgcggcaacaaaggcgcggcattaaccacctttatc
agtctggcgggtagctatctggttctgatgccaaataacccgcgcgcaggtggcatttct
cgccgtatcgaaggcgatgaccgtaccgaattaaaagaagcactggcaagccttgaactg
ccggaaggcatggggcttatcgtgcgcaccgctggcgtaggcaaatctgctgaggcgctg
caatgggatttaagcttccgcctgaaacactgggaagccatcaaaaaagccgctgaaagc
cgcccggctccgttcctgattcatcaggagagcaacgtaatcgttcgcgccttccgcgat
tatttacgtcaggatatcggcgaaatccttatcgataacccgaaagtcctcgaactggca
cgtcagcatatcgctgcattaggtcgcccggatttcagcagcaaaatcaaactgtacacc
ggcgagatcccgctgttcagccactaccagatcgagtcgcagatcgagtccgccttccag
cgtgaagtccgtctgccatccggtggttccattgttatcgacagcaccgaagcgttaaca
gccatcgacatcaactccgcacgcgcgacccgcggcggcgatatcgaagaaactgcgttt
aacaccaacctcgaagccgccgatgagattgctcgtcagctgcgcctgcgtgacctcggc
ggcctgattgttatcgacttcatcgacatgacgccagtacgccaccagcgtgcggtagaa
aaccgtctgcgtgaagcggtgcgtcaggaccgtgcgcgtattcaaatcagccatatttct
cgctttggcctgctggaaatgtcccgccagcgcctgagcccatcactgggtgaatccagc
catcacgtctgcccgcgctgctccggtaccggtaccgtgcgtgacaacgaatcgctgtcg
ctctctattctgcgtttgatcgaagaagaagcgctgaaagagaacacccaggaagttcac
gccattgttcctgtgccaatcgcttcttatctgctgaatgaaaaacgttctgcggtgaat
gcgattgaaacgcgtcaggacggtgttcgctgcgtgattgtgccaaacgatcagatggaa
accccgcactaccacgtgttgcgcgtgcgcaaaggggaagaaacgccgaccttaagctac
atgctgccgaagctgcatgaagaagcgatggcgctgccgtctgaagaagagttcgctgaa
cgtaagcgtcctgaacaacctgcactggcaacctttgccatgccggatgtaccgccagcg
ccaaccccagctgaacctgccgcgactgtcgtagccccagcaccgaaagctgcaacggca
acaccagcagctcctgcacaacctgggctgttaagccgcttcttcggcgcactgaaagcg
ctgttcagcggtggtgaagaagccaaaccgaccgagcaaccaacaccgaaagcagaagcg
aaaccggaacgtcaacaggatcgtcgcaaacctcgtcagagcaaccgccgtgaccgtaat
gagcgccgcgacacccgtagtgaacgtactgaaggcagcgataatcgcgaagaaaaccgt
cgtaatcgtcgccaggcacagcagcaaactgccgagacgcgtgagagccgtcagcaggct
gaggtaacggaaaaagcacgtaccaccgacgagcagcaagtgccgcgtcgtgaacgtagc
cgccgccgtaacgatgataaacgtcaggcgcaacaagaagcgaaggcgctgaatgttgaa
gagcaatctgttcaggaaaccgaacaggaagaacgtgtacgtccggttcagccgcgtcgt
aaacagcgtcagctcaatcagaaagtgcgttacgagcaaagcgtagccgaagaagcggta
gtcgcaccggtggttgaagaaactgccgctgccgaaccaattgttcaggaagctccagct
ccacgcacagaactggtgaaagtcccgctgccagtcgtagcgcaaactgcaccagaacag
caagaagagaacaatgctgataaccgtgacaacggtggcatgccgcgtcgttctcgccgc
tcgcctcgtcacctgcgcgtgagtggtcagcgtcgtcgtcgctatcgtgacgagcgttat
ccaacccagtcgccaatgccgttgaccgtagcgtgcgcgtctccggaactggcctctggc
aaagtctggatccgctatccaattgtacgtccgcaagatgtacaagttgaagagcagcgc
gaacaggaagaagtacaagtgcagccgatggtgactgaggtccctgtcgccgccgctgtc
gaacctgttgttagcgcgccagttgttgaagaaatggctgaagtcgtagaagcccccgta
ccggttgccgaaccgcaaccggaagtggttgaaacgacgcatcctgaagtgattgccgcc
gcggtaactgaacagccgcaggtgattaccgagtctgatgttgccgtagcccaggaagtc
gcagaacacgcagaaccgatggttgaaccgcaggaagagacggcagatgcagatattgaa
gaagttgccgaaactgctgaggttgtggttgctgaacctgaagttgttgctcaacctgcc
gcgccagtcgtcgctgaagtcgcagcagaagttgaaacggtggccgcggttgaaccagag
atcaccgttgagcataaccacgctaccgcgccaatgacgcgcgctccggcaccggaatat
gttccggaggcaccgcgtcacagtgactggcagcgccctacttttgccttcgaaggtaaa
ggtgccgcaggtggtcatacggcaacgcatcatgcctctgccgctcctgcgcgtccgcaa
cctgttgagtaa
DBGET
integrated database retrieval system
