Shigella flexneri 2002017 (serotype Fxv): SFxv_3157
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Entry
SFxv_3157 CDS
T01883
Symbol
recJ
Name
(GenBank) SsDNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sfe
Shigella flexneri 2002017 (serotype Fxv)
Pathway
sfe03410
Base excision repair
sfe03430
Mismatch repair
sfe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SFxv_3157 (recJ)
03430 Mismatch repair
SFxv_3157 (recJ)
03440 Homologous recombination
SFxv_3157 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfe03400
]
SFxv_3157 (recJ)
DNA repair and recombination proteins [BR:
sfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SFxv_3157 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SFxv_3157 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SFxv_3157 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PEP-utilizers
Motif
Other DBs
NCBI-ProteinID:
ADA75209
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Position
complement(3009989..3011722)
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AA seq
577 aa
AA seq
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MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKA
VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE
VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR
DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPL
DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQVEALTLCEKLERSRDTLPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP
GMMLKFGGHAMAAGLSLEEDKFELFQQRFGELVTEWLAPSLLQGEVVSDGPLSPAEMTME
VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA
LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacaacagatacaacttcgtcgccgtgaagtcgatgaaacggcagacttgcccgct
gaattgcctcccttgctgcgccgtttatacgccagccggggagtacgcagtgcgcaagaa
ctggaacgcagtgttaaaggtatgttgccctggcagcaactaagcggtgtcgaaaaggcc
gttgagatcctttacaacgcttttcgcgaaggaacgcggattattgtggtcggtgatttc
gacgccgacggcgcgaccagcacggctctaagcgtgctggcgatgcgctcgcttggttgc
agcaatatcgactacctggtaccaaaccgtttcgaagacggttacggcttaagcccggaa
gtggtcgatcaggcccatgcccgtggcgcgcagttaattgtcacggtggataacggtatt
tcctcccatgcgggagttgagcacgctcgctcgttgggcatcccggttattgttaccgat
caccatttgccgggcgacacattacccgcagcggaagcgatcattaaccctaacttgcgc
gactgtaatttcccgtcgaaatcactggcaggcgtgggtgtggcgttttatctgatgctg
gcgctgcgcacctttttgcgcgatcagggctggtttgatgagcgcggcatcgcaattcct
aacctggcagaactgctggatctggtagcactggggacagtagcggacgtcgtgccgctg
gacgctaataatcgcattctgacctggcaggggatgagtcgcatccgtgccggaaagtgc
cgtccagggattaaagcgctgctggaagtggcaaatcgcgatgcacaaaaactagccgcc
agcgatttaggttttgcgctgggaccgcgtctcaatgctgccgggcgactggatgatatg
tccgttggtgtggcgctgttgctgtgcgacaacatcggcgaagcgcgcgtgctggcaaat
gaactcgatgcgctaaaccagacgcgaaaagagatcgaacaaggaatgcaggttgaagcc
ctgaccctgtgcgagaaactggagcgcagccgtgacacgctacccggcgggctggcaatg
tatcaccccgaatggcatcagggcgttgtcggtattctggcttcgcgtatcaaagagcgt
tttcaccgtccggttatcgcctttgcgccagcaggtgacggtacgctgaaaggttccggt
cgctccattcaggggctgcatatgcgtgatgcgctggagcgattagacacactctacccc
ggcatgatgctcaagtttggcggtcatgcgatggcggcgggtttgtcgctggaagaggat
aaattcgaactctttcaacaacggtttggcgaactggttactgagtggctggccccttcg
ctattgcaaggcgaagtggtgtcagacggtccgttaagcccggccgaaatgaccatggaa
gtggcgcagctgctgcgcgatgctggcccgtgggggcagatgttcccggagccgctgttt
gacggtcatttccgtctgctgcaacagcggctggtgggcgaacgtcatttgaaggtgatg
gtcgaaccggtcggcggcggtccactgctggatggtattgcttttaatgtcgataccgct
ctctggccggataacggcgtgcgcgaagtgcaactggcttataagctcgatatcaacgag
tttcgcggcaaccgcagcctgcaaattatcatcgacaatatctggccaatttag
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