Shigella flexneri 2002017 (serotype Fxv): SFxv_4202
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Entry
SFxv_4202 CDS
T01883
Symbol
rho
Name
(GenBank) Transcription termination factor rho
KO
K03628
transcription termination factor Rho
Organism
sfe
Shigella flexneri 2002017 (serotype Fxv)
Pathway
sfe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFxv_4202 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfe03021
]
SFxv_4202 (rho)
03019 Messenger RNA biogenesis [BR:
sfe03019
]
SFxv_4202 (rho)
Transcription machinery [BR:
sfe03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SFxv_4202 (rho)
Messenger RNA biogenesis [BR:
sfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SFxv_4202 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
ADA76156
LinkDB
All DBs
Position
4014647..4015978
Genome browser
AA seq
443 aa
AA seq
DB search
MDDPAIPFTTLSSRFTPSLRTHTTMNLTELKNTPVSELITLGENMGLENLARMRKQDIIF
AILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDT
ISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTED
LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEV
TEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT
VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFK
GTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM
EFLINKLAMTKTNDDFFEMMKRS
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggatgatcctgccataccattcacaacattaagttcgagatttaccccaagtttaaga
actcacaccactatgaatcttaccgaattaaagaatacgccggtttctgagctgatcact
ctcggcgaaaatatggggctggaaaacctggctcgcatgcgtaagcaggacattattttt
gccatcctgaagcagcacgcaaagagtggcgaagatatctttggtgatggcgtactggag
atattgcaggatggatttggtttcctccgttccgcagacagctcctacctcgccggtcct
gatgacatctacgtttcccctagccaaatccgccgtttcaacctccgcactggtgatacc
atctctggtaagattcgcccgccgaaagaaggtgaacgctattttgcgctgctgaaagtt
aacgaagttaacttcgacaaacctgaaaacgcccgcaacaaaatcctctttgagaactta
accccgctgcacgcaaactctcgtctgcgtatggaacgtggtaacggttctactgaagat
ttaactgctcgcgtactggatctggcatcacctatcggtcgtggtcagcgtggtctgatt
gtggcaccgccgaaagccggtaaaactatgctgctgcagaacattgctcagagcattgct
tacaaccacccggattgtgtgctgatggttctgctgatcgacgaacgtccggaagaagta
accgagatgcagcgtctggtaaaaggtgaagttgttgcttctacctttgacgaacccgca
tctcgccacgttcaggttgcggaaatggtgatcgagaaggccaaacgcctggttgagcac
aagaaagacgttatcattctgctcgactccatcactcgtctggcgcgcgcttacaacact
gttgttccggcgtcaggtaaagtgttgaccggtggtgtggacgccaatgcccttcatcgt
ccgaaacgcttctttggtgcggcgcgtaacgtggaagagggcggcagcctgaccattatc
gcgacggcgcttatcgataccggttctaaaatggacgaagttatttacgaagagtttaaa
ggtacaggcaacatggaactgcacctctctcgtaagatcgctgaaaaacgcgtcttcccg
gctatcgactacaaccgttccggtacccgtaaagaagagctgctcacgactcaggaagaa
ctgcagaaaatgtggatcctgcgcaaaatcattcacccgatgggcgaaatcgatgcaatg
gaattcctcattaataaactggccatgaccaagaccaatgacgatttcttcgaaatgatg
aaacgctcataa
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