Streptomyces ferrugineus: IM697_08210
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Entry
IM697_08210 CDS
T07428
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sfeu
Streptomyces ferrugineus
Pathway
sfeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IM697_08210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfeu03019
]
IM697_08210
03009 Ribosome biogenesis [BR:
sfeu03009
]
IM697_08210
Enzymes [BR:
sfeu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IM697_08210
Messenger RNA biogenesis [BR:
sfeu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IM697_08210
Ribosome biogenesis [BR:
sfeu03009
]
Prokaryotic type
rRNA processing factors
IM697_08210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QOV38354
UniProt:
A0A7M2SQ38
LinkDB
All DBs
Position
1793787..1797836
Genome browser
AA seq
1349 aa
AA seq
DB search
MLEPTEPNEGSELNTPSDTLPPRRRRRAASRPAGPPTAAAETQAAEVVEPAIPVAEAADV
AAVTEEAEMPEESVESVEADVTSEAEQAEEAEAAEETVEAAAAGRPRRRAVRRASAPAGA
PAAAEAAETVVPSPTAAPAAEETPAAAAVESTEEAAPPRTRRRATRRVSAPVGSPEPVEA
AVTEATGATRAADSDAAAETPAAAETAEAPAEAAPPRTRRRATRRAAAPTETPAAVEDVA
AEESTEAAPEAEAAPEAEAPAEAAAPAEAVEEAAPRRTRRRATRRVSAPAAGDEAAEAPV
ETPVTAETPVTPGVETEAAAVAGVAGVAPAAEAVEEAAPRRRRRVARRAATGFAEPARTA
AAQEPEEAPRPARPAMAVFQAPVFTEPQFQTPERAAAEAAAGTETEDVEELPEEPAAAPR
RRRRRRGGDGEEAEAPQTTEAAAEDETEEAEEAAEGEEAEDTGSRRRRRRGGRRRRRGEA
ADTESEGADAETEDAAVAQATQDAEDTAEQEEEDADDARAEDGGGSSSSSRRRRRRRRRA
GDTSVDTEPGEGDPERTVVKVREPRPPREKGAEPSDEVQSIKGSTRLEAKKQRRREGREQ
GRRRVPIITEAEFLARREAVERVMVVRQHGDRTQIGVLEDNVLVEHYVNKEQSTSYVGNV
YLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIESALKSGQSVLVQV
TKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAGV
IVRTAAEGASEDELRRDVERLQAQWEDIQKKSKNGNAPTLLYGEPDMTVRVVRDIFNEDF
SKVVVSGADAWETVHGYVSHVAPDLAERLQKWTSEADVFATYRIDEQLAKALDRKVWLPS
GGSLVIDRTEAMVVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVID
FIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVH
CNGRGVIVHMEQPTAPGGGGKRKKRARAGAGPEQVHEATVAAEPVETAEEEAETEAEVAA
EVAEPAALAEPAFAPDEELYSSVAEAEAAARGGRSRRRGGRRVSAPAGAPKKAEAVPTAQ
DVTVAEEVERPVQPEPAAEAKAEPVAVEDAVVEAPAAEEAAPKGRTRRRATRKVSAPAGS
PTGAEATVLTAPEPVAEAEAPAEEAAAAPAEAVAESVAPARPRRRAVRKATAPTASEEEA
VVVLPAAEAQATAEEGVEEAAPAKKTARKAAKKATAKKAATKKTAAKKTAAKKTTAKKAT
AKKAAKTTKTAAAKSAAKKTAVSAATDES
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgaccgaacccaacgagggttccgaactgaacactcccagcgacaccctg
ccgccgcgccgtcggcgccgtgccgcgtcccgcccggcgggaccgcccacggcagccgcc
gagacgcaggccgcggaggtcgtcgagccggccataccggtcgcggaggccgcggatgtc
gcggcggtgaccgaggaggccgagatgccggaggagagcgtcgagtccgtcgaggccgac
gtgacttccgaggccgagcaggccgaagaagccgaagcggccgaggagacggtggaagcc
gccgctgccggtcgcccacgtcggcgtgcggtgcgccgcgcgtccgcccccgctggggcg
cccgcggctgccgaggcagccgagaccgtggtgccctcgccgaccgccgcgccggccgcg
gaggagaccccggccgcagccgcagtggagagcaccgaggaggccgcaccgcctcgtacg
cgtcgccgtgccacgcgtcgggtgtcggcgcccgtcggttccccggagccggtggaggcc
gcggtgaccgaggccaccggcgccacccgtgccgctgattccgatgcggcggccgagacc
cccgccgccgccgagaccgccgaagcgcctgccgaggccgctccgcctcgtacgcgtcgc
cgtgccacgcgtcgggccgccgcgcccaccgagacaccggccgccgtcgaggacgtcgct
gccgaggagagcacggaggccgcccccgaggcggaggccgcccccgaggcagaggcgccc
gccgaggccgcggcccctgccgaggccgtcgaagaggccgccccgcgtcgcacccgtcgt
cgtgccacgcgccgcgtgtccgcaccggccgccggtgacgaggccgccgaggcccctgtc
gagacgccggtgacggcggagacccccgtgacccccggtgtcgagaccgaggccgccgcg
gtcgccggagtcgccggagtcgctcccgccgccgaggccgtcgaggaggccgccccgcgc
cgccgtcgtcgggtcgcccgacgggccgccaccgggttcgccgagcccgctcggacggcc
gccgctcaggagcccgaggaggccccgcgcccggcgcggcccgccatggccgtgttccag
gcgccggtgttcaccgagccgcagttccagacgcccgagcgcgccgccgccgaggccgcc
gccgggacggagaccgaggacgtcgaggagctcccggaggagccggccgccgcccccagg
cgccgtcgccggcggcgcggcggtgacggcgaggaggccgaggccccccagaccaccgag
gccgccgccgaggacgagaccgaggaggccgaagaggccgccgagggcgaggaggccgag
gacaccggctcgcgtcgccgccgccgtcgtggtggccgacgccgtcgtcgcggcgaggcc
gccgacacggagtccgagggcgcggacgccgagaccgaggacgccgcagtcgcgcaggcg
acgcaggacgccgaggacaccgccgagcaggaggaagaggacgccgacgacgcccgcgcc
gaggacggcggcgggtccagctccagcagccggcgccgccggcgccgtcgtcgccgcgcc
ggtgacacctccgtcgacaccgagcccggcgagggcgaccccgagcgcaccgtcgtcaag
gtccgcgagccccgtcccccgcgggaaaagggtgccgagccgtccgacgaggtgcagtcc
atcaagggctcgacccgcctggaggccaagaagcagcgccgccgggaaggccgtgagcag
ggccgccgacgcgtcccgatcatcaccgaggccgagttcctggcccgccgcgaggccgtc
gagcgcgtgatggtcgtccgccagcacggcgaccgcacgcagatcggcgtcctcgaggac
aacgtgctcgtcgagcactacgtcaacaaggagcagtcgacctcgtacgtcggcaacgtc
tacctgggcaaggtccagaacgtgctgccgtcgatggaggccgccttcatcgacatcggc
aagggccgcaacgccgtcctgtacgccggtgaggtcaacttcgaggcgctgggcatggcc
aacggcccgcggcgcatcgagtccgccctcaagtccggccagtccgtcctcgtgcaggtc
accaaggacccgatcgggcacaagggcgcccgtctgaccagccaggtctccctgccgggc
cgttacctcgtgtacgtccccgagggctccatgaccggcatcagccgcaagctgcccgac
accgagcgggcccggctgaagaccatcctcaagaagatcgtccccgaggacgcgggcgtc
atcgtgcgcaccgccgccgagggcgcgagcgaggacgagctgcgccgggacgtcgagcgg
ctgcaggcgcagtgggaggacatccagaagaagtcgaagaacggcaacgcgccgacgctg
ctgtacggcgagccggacatgaccgtccgggtcgtccgggacatcttcaacgaggacttc
tccaaggtcgtcgtcagcggcgccgacgcctgggagaccgtccacgggtacgtgtcccac
gtggcgccggacctcgccgagcggctgcagaagtggaccagtgaggccgacgtcttcgcc
acgtaccggatcgacgagcaactcgccaaggcgctggaccgcaaggtctggctgcccagc
ggcggttcgctggtgatcgaccggaccgaggcgatggtcgtcgtcgacgtcaacaccggc
aagttcaccggccagggcggcaacctcgaggagaccgtcaccaggaacaacctggaggcg
gccgaggagatcgtccgccagctgcggctgcgcgacctcggcggcatcatcgtcatcgac
ttcatcgacatggtgctggagtccaaccgggacctggtgctgcggcgcctgctggagtgc
ctgggccgggaccgtacgaagcaccaggtggcggaagtgacctcgctgggcctggtccag
atgacccgcaagcgggtcggccagggcctgctggagtccttctccgagacctgcgtccac
tgcaacgggcgcggcgtcatcgtgcacatggagcagccgacggcccccggtggcggcggc
aagcgcaagaagcgcgcccgtgccggtgccggccccgagcaggtgcacgaggccacggtc
gccgccgagccggtcgagacggccgaggaggaggcggagaccgaggccgaggtcgcggcg
gaggtcgccgagccggccgcgctcgccgagcccgccttcgcgcccgacgaggagctgtac
agcagcgtcgccgaggcggaggccgccgcacgcggcggtcgttcgcggcgtcgtggcggt
cgccgggtgtccgctccggcgggtgcgccgaagaaggccgaggcggtgcccacggcccag
gacgtgaccgtcgccgaggaggtcgagcgtccggtgcagccggagccggccgccgaggcg
aaggccgagccggtggccgtggaggacgcggtcgtcgaggcacccgccgccgaggaggcc
gctcccaaggggcgtacgcggcgtcgcgccacccgcaaggtgtccgcgcccgccgggtcg
cccacgggggccgaggccaccgtgctgacggcgcccgagccggtggcggaggccgaggct
ccggccgaggaggccgcggcggctccggccgaggcggtcgccgagagcgttgctccggcc
cgtccgcggcgccgtgccgtgcgcaaggccaccgcgccgaccgcgtccgaggaggaggcc
gtcgtggtccttccggccgccgaggcgcaggccaccgccgaggagggcgtcgaggaggcg
gctccggccaagaagacggcccgtaaggcggccaagaaggcgacggcgaagaaggccgcc
accaagaagaccgcggccaagaagacggccgccaagaagacgacggccaagaaggcgacg
gccaagaaggcggcgaagaccaccaagacggccgcggccaagtcggcggcgaagaagacc
gcggtctccgccgccaccgacgaaagctga
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