Streptomyces ferrugineus: IM697_19695
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Entry
IM697_19695 CDS
T07428
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sfeu
Streptomyces ferrugineus
Brite
KEGG Orthology (KO) [BR:
sfeu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfeu03016
]
IM697_19695
Enzymes [BR:
sfeu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IM697_19695
Transfer RNA biogenesis [BR:
sfeu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IM697_19695
Prokaryotic type
tRNA splicing ligases
IM697_19695
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QOV40431
UniProt:
A0A7M2SYT1
LinkDB
All DBs
Position
4308836..4310248
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AA seq
470 aa
AA seq
DB search
MELVQEAPHRFRIAPHGPMRVPGVVFASRNLLRDAEQSLEQVAAVATLPGIVGASYAMPD
IHWGYGFPIGGVAATDVAEGGVVSPGGVGFDISCGVRLLAADTDGEGLRAALPAVMDGLD
RAIPRGAGPGGVWHLTGPGELERILRGGSRYAVQEGHGEERDLTRCEDGGAVADADVDQV
SARARERGLGQVGSLGSANHFLEVQVVDEVYDETAAAAFGLAPGQVCVMIHCGSRGLGHQ
ICTDHVRLMDRAMARYGIKVPDRQLACTPVESPEGERYLGAMAAAANYGRANRQLLSDAA
RTVFRRAAGTRLSLVYDVSHNLAKIETHPVAGARRTLCVHRKGATRAFPPGHPDLPDELR
ATGQPVLIPGTMGTASYVLVGVTGGDAFSSTCHGAGRVLSRHRAARAVGGRELRARLESA
GIAVRPRSLRGLAEETPEAYKDVNEVVAASEGAGLCRTVARLVPLGVVKG
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggaactggtccaggaagctccccaccgcttccgtatcgccccgcacggcccgatgcgg
gtgccgggcgtggtgttcgcgtcccggaacctgctcagggacgccgagcagtcactggag
caggtggccgcggtggccacgctgcccggcatcgtcggcgcctcgtacgccatgcccgac
atccactggggatacggcttccccatcggcggcgtcgcggcgaccgacgtggccgagggc
ggggtcgtctcgccgggcggggtcggcttcgacatctcctgcggggtgcggctgctggcc
gccgacaccgacggcgaggggctgcgggcggcgctgcccgccgtgatggacggcctcgac
cgggccattccgcgcggcgcggggcccggcggggtgtggcatctgaccggcccgggggag
ctggagcggatcctgcgcggcgggtcgcggtacgcggtccaggaggggcacggcgaggag
cgcgacctgacgcgctgcgaggacggcggggcggtcgccgacgccgacgtcgaccaggtc
agcgcgcgggcgcgcgagcgcggcctcggccaggtcggcagcctcggctcggccaaccac
ttcctggaggtgcaggtcgtcgacgaggtgtacgacgagacggccgccgccgccttcggg
ctcgcccccggccaggtgtgcgtgatgatccactgcggctcccgcggcctcggccaccag
atctgcaccgatcacgtccggctgatggaccgcgcgatggcccgctacggcatcaaggtc
ccggaccgccaactggcctgcacgccggtcgagtcaccggagggcgagaggtacctcggc
gccatggccgccgcggccaactacggccgcgccaaccgccagttgctgtccgacgcggcc
cgcacggtcttccgcagggccgccggcacccggctgtccctggtgtacgacgtctcccac
aacctcgccaagatcgagacccacccggtggccggggcccgccgcacgctctgcgtccac
cgcaagggcgccacccgggccttcccgcccggccacccggacctccccgacgaactgcgc
gcgaccggccagccggtgctgatccccggcacgatgggcaccgcctcctacgtcctggtc
ggcgtgaccggcggcgacgcgttctcctccacctgccacggcgccggccgggtcctcagc
cgccaccgcgccgcccgcgccgtgggcggccgggagctgcgggcccggctggagtcggcg
ggcatcgcggtacgcccgcggtcgttgcgcggcctggcggaggagactcccgaggcgtac
aaggacgtgaacgaggtggtggccgcgagtgagggtgcggggctgtgccggacggtggcc
cggctggtgccgctgggggtggtgaagggctga
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