Streptomyces ferrugineus: IM697_41690
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Entry
IM697_41690 CDS
T07428
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sfeu
Streptomyces ferrugineus
Brite
KEGG Orthology (KO) [BR:
sfeu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfeu03016
]
IM697_41690
Enzymes [BR:
sfeu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IM697_41690
Transfer RNA biogenesis [BR:
sfeu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IM697_41690
Prokaryotic type
tRNA splicing ligases
IM697_41690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QOV36435
UniProt:
A0A7M2SL63
LinkDB
All DBs
Position
complement(9381205..9382398)
Genome browser
AA seq
397 aa
AA seq
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MSYVEMPGAKVPIRMWTDPATVEDVALQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSRLRSRIEQAIPVGRGMHDDPVDPG
RLHGLATGGWDDFWGRFDGIADAVKFRQERAGKQMGTLGGGNHFVEVCTDTDGSVWLMLH
SGSRNIGKELAEHHIGVAQKLPHNQGLVDRDLAVFVADTPQMAAYRNDLFWAQEYARYNR
TIMMALLKDVVRKEFKKAKPTFEPEISAHHNYVAEERYDGMDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNSMSFNSASHGAGRRMSRNAAKRRFSTKDLEEQTRGVECRKDSG
VVDEIPGAYKPIEQVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggagatgccgggcgcgaaggtgcccatccggatgtggaccgacccggcg
acggtcgaggacgtggccctgcagcagctgcggaacgtcgcgaccctgccgtggatcaag
gggctcgcggtcatgccggacgtccactacgggaagggcgcgacggtcgggtccgtcatc
gcgatgcagggggccgtgtgtcccgcggcggtgggcgtggacatcggctgcgggatgtcg
gcggtgaggacgtcgctcaccgcgaacgatctgccgggggacctgtcgcggctgcggtcg
aggatcgagcaggcgattccggtggggcgggggatgcatgacgaccccgtcgaccccggg
cggctgcacgggctcgccaccggcgggtgggacgacttctgggggcggttcgacgggatc
gcggacgcggtcaagttccgtcaggagcgcgccggtaagcagatgggaacgctcggcggc
ggcaaccactttgtcgaggtatgcacggatacggacggttctgtctggctgatgctgcac
tcgggttcccgcaacatcggcaaggaactggccgagcatcacatcggcgtggcccagaag
ctcccgcacaaccagggcctggtcgaccgggacctcgccgtcttcgtggcggacaccccg
cagatggcggcgtaccgcaacgacctgttctgggcgcaggagtacgccaggtacaaccgc
acgatcatgatggcgctcctgaaggacgtggtccgcaaggagttcaagaaggcgaagccg
accttcgagcccgagatcagcgcgcaccacaactacgtggccgaggagcgctacgacggc
atggacctgctcgtgacccgtaagggcgcgatccgggccggctccggcgagtacggcatc
atcccgggctccatgggcaccggctcgtacatcgtgaagggcctcgggaactcgatgtcc
ttcaactcggcctcgcacggcgcgggtcggcgcatgagccgcaacgcggccaagcgccgg
ttctcgacgaaggatctggaggagcagacgcggggcgtggagtgccgtaaggactccggt
gtcgtggacgagatcccgggtgcctacaagccgatcgagcaggtcatcgaccagcagcgg
gacctcgtggaggtcgtggcgaagctgaagcaggtcgtgtgcgtgaagggctga
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