Serratia fonticola GS2: AV650_01795
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Entry
AV650_01795 CDS
T04716
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sfg
Serratia fonticola GS2
Pathway
sfg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AV650_01795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfg03019
]
AV650_01795
Enzymes [BR:
sfg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AV650_01795
Messenger RNA biogenesis [BR:
sfg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AV650_01795
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CCDC138_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALX92372
UniProt:
A0A0F7D1N0
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All DBs
Position
379804..381093
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AA seq
429 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPLVLEALEKKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKT
LAFLASTFHYLLSHPAKEGRQTNQPRALIMAPTRELAVQIHSDAEALSQSTGLKLGLAYG
GDGYDKQLKVLESGVDILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPAVDQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIQEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
DFTKGNLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLA
CEEYALNLPAIETYTGHSIPVSKYNSDALLSDLPAPKRLVRPRGNNGPRRNSSAPRRGGA
PRNNRKRSG
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttgaccgaacagaagttttccgacttcgccctgcacccgttagtc
cttgaagcccttgagaaaaaagggtttcacaactgcacgcccatccaggcgttggcattg
ccgctcaccctcagtgggcgcgacgttgcaggtcaggcgcaaaccggtaccggaaagacg
ctggcatttttagcgtctacttttcactatttgctgtcccacccggcgaaagaaggtcgc
cagaccaaccagccgcgcgccttgatcatggcgcctacgcgtgaactggcggtgcagatc
cattccgatgcagaagcgctgtcgcagtctaccgggttgaagcttggcctggcctacggc
ggtgatggctatgacaaacagctgaaagtgctggaaagcggcgtagatattctggtgggg
accaccggccgtttaatcgactacgccaaacaaaattatatcgatctgggtgctatccag
gttgtggtgctcgatgaagccgaccgcatgtacgatctgggctttatcaaagatatccgc
tggctgttccgccgtatgcctgcggtcgatcaacgcctgaacatgttgttctctgccacc
ctgtcctatcgcgtacgcgagctggcctttgagcagatgaacaatgccgaatatgtggaa
gttgaaccggaacagaaaaccggccaccgcattcaggaagagctgttctacccttccaac
gaagaaaagatgcgcctgctgcagacgctgatcgaggaagagtggccggaccgctgcatc
atcttcgccaacaccaagcaccgctgtgaagacatctggggccatctggctgccgatggt
caccgcgtaggcctgctgaccggcgacgtggcgcagaaaaaacgcctgcgtattctggac
gacttcaccaagggtaacctggatatcctggtcgccaccgatgtcgccgcacgcggcctg
catattccgttggtgactcacgtcttcaactacgatctgccggatgactgcgaagactac
gtgcaccgcattggccgtactggccgcgcgggcgaaagcggtcactccatcagcctggcc
tgtgaagagtacgcgctgaatctgccagccatcgagacttataccggccacagcattccg
gtgagcaagtacaacagcgatgcgctgctgagcgatctgccagcaccgaagcgcctggtg
cgccctcgtggcaacaacggcccacgccgtaactcttccgcgccacgtcgtggtggtgcg
ccgcgtaacaaccgtaaacgttcgggctaa
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