Serratia fonticola GS2: AV650_03500
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Entry
AV650_03500 CDS
T04716
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sfg
Serratia fonticola GS2
Pathway
sfg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sfg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AV650_03500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfg03400
]
AV650_03500
Enzymes [BR:
sfg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AV650_03500
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AV650_03500
DNA repair and recombination proteins [BR:
sfg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AV650_03500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zf-dskA_traR
Motif
Other DBs
NCBI-ProteinID:
ALX92679
LinkDB
All DBs
Position
773730..774539
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AA seq
269 aa
AA seq
DB search
MPELPEVETSRRGIEPYLVGHTIQYAVVRNARLRWPVSEQILALSDRPVRSVQRRAKYLL
IELDHGWIIVHLGMSGSLRMLAEEIEPGKHDHVDLVMSNGFILRYTDPRRFGAWLWCEDL
AASNVLAHLGPEPLGEEFNGAYLYEKSRNKRTLIKPWLMDNKLVVGVGNIYASESLFTAG
ILPDRQAGSLTKAQADLLAETIKAVLLRSIEQGGTTLRDFLQSDGKPGYFAQELQVYGRA
GEPCRACGTPIESAKHGQRSTFFCRRCQH
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagaagtcgaaaccagccgccgtggtatcgagccttatcttgttggc
cacaccatccagtatgcggtggtgcgtaacgctcgtttgcgttggccggtctccgagcag
atcctggcgctgagcgatcggccggtgcgcagcgtacagcgccgtgccaagtatctgctg
atcgagttggaccacggctggattatcgtgcatctggggatgtctggcagcttgcgtatg
ctggcagaggaaatcgagccaggtaagcatgaccacgtcgatctggtgatgagcaacggt
tttattctgcgctacaccgacccgcgccgctttggtgcctggctatggtgtgaagatctg
gccgccagcaacgtgttggctcatcttggcccggaaccgctgggtgaagagttcaatggc
gcctacctgtacgagaagtcccgtaataagcgcacgctgatcaagccttggttgatggat
aacaagctggtggttggcgtggggaatatctatgccagcgaatcgctgtttaccgccggg
atcctgccagatcgtcaggcgggatccttgaccaaggcgcaggcggatctgttggccgaa
accatcaaggcggtgttgctgcgttcaattgaacaagggggaacgacgctgcgtgacttc
ctgcagtcggacggtaagccggggtatttcgcgcaggaactgcaggtctatggccgggca
ggtgaaccctgccgcgcctgtggcacaccgatcgagagcgccaaacacgggcagcgcagc
accttcttctgccgccgctgccagcactga
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