KEGG   Serratia fonticola GS2: AV650_05635
Entry
AV650_05635       CDS       T04716                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
sfg  Serratia fonticola GS2
Pathway
sfg02024  Quorum sensing
sfg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sfg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AV650_05635 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AV650_05635 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sfg03019]
    AV650_05635 (hfq)
   03036 Chromosome and associated proteins [BR:sfg03036]
    AV650_05635 (hfq)
Messenger RNA biogenesis [BR:sfg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AV650_05635 (hfq)
Chromosome and associated proteins [BR:sfg03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AV650_05635 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: ALX93067
UniProt: A0A0F7HBF4
LinkDB
Position
1224117..1224428
AA seq 103 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNTPSSGGTSNYHHGNNPSAPQQPQQESDDAE
NT seq 312 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttgcaagatccgttcctgaacgcattgcgtcgtgaacgtgtt
ccggtttctatttatttggtgaatggtattaagctgcaaggccagattgagtcttttgac
cagtttgtcatcctgttgaagaacacggtgagccagatggtttataagcacgctatctct
accgttgttccatcgcgcccggtatcgcaccacagcaacaccccgagcagcggcggcacc
agcaattatcaccatggtaacaacccgtctgcgccgcaacagccgcagcaggaaagcgat
gacgctgaataa

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