Serratia fonticola GS2: AV650_05995
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Entry
AV650_05995 CDS
T04716
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sfg
Serratia fonticola GS2
Pathway
sfg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AV650_05995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfg03019
]
AV650_05995
03009 Ribosome biogenesis [BR:
sfg03009
]
AV650_05995
Enzymes [BR:
sfg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AV650_05995
Messenger RNA biogenesis [BR:
sfg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AV650_05995
Ribosome biogenesis [BR:
sfg03009
]
Prokaryotic type
rRNA helicases
AV650_05995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
DRTGG
AAA_19
UTP25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALX93134
LinkDB
All DBs
Position
1308752..1310710
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AA seq
652 aa
AA seq
DB search
MTTELETSFADLGLSAPIIAALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNLDAALKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSGLKGLVLDEADEMLRMGFIEDVETIMAEIPA
EHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKSGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPNADLLGERRLAKFAAKVQQQLESSDLDMYRALLAKLQPGEDLDME
TLAAALLKMAQGERPLILPPDPVFKPRQRREFNDRDDRGGERSNDRRRDARPDSRDGGAE
RPRRERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP
KGMPGEILNHFTRTRILNKPMNMQLLGDAQPHERRERPAGGNGGERRGGARPFNGERREG
APAPRRSFGERREGGNAAGGERRGGNFNRDKPAPRRDDAAAPAAPRRRFGDA
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgacctggggctgtctgctccgatcattgct
gccctgaccgatctgggctacgaaaaaccatcaccgatccaggctgagtgtattcctcac
ctgttgaacggtcgcgacgtgctgggcatggcgcagaccggtagtggtaaaactgcggcg
ttctcgctgcccctgctgcacaacctcgatgcagccctgaaagcaccacaaatcctggta
ctggctccaacccgcgaactggcggttcaggtagctgaagccatgaccgatttctccaag
cacatgcatggcgttaacgtggtggccctgtacggtggccaacgttatgacgtgcagctg
cgcgctctgcgtcagggcccgcaaatcgtagtagggaccccaggccgtctgctggatcac
ctgaaacgtggcaccctgaacctttctggcctgaaaggcctggttctggacgaagccgac
gaaatgctgcgcatgggctttatcgaagacgtagaaaccatcatggcggagatcccggct
gaacatcagaccgcgctgttctctgcgaccatgccggaagcgatccgtcgtattacccgt
cgcttcatgaaagatccacaggaagtgcgcattcagtccagcatcactactcgtccagac
atcagccagagctactggaccgtgcagggcatgcgtaaaaacgaagcgctggtgcgtttc
ctggaagcggaagattttgacgcggcgatcatcttcgtacgtaccaaaaatgcgaccctg
gaagtggctgaagcgctggagcgcagcggttacaacagcgccgcactgaacggtgatatg
aaccaggcgctgcgtgagcagaccctggagcgtctgaaaagtggccgtctggatattctg
atcgccaccgacgttgccgctcgtggtctggacgttgagcgtatcagtctggtagtaaac
tatgatatccctatggattcagagtcttacgttcaccgtatcggccgtaccggtcgtgcg
ggccgtgctggccgcgcgctactgttcgtagaaaaccgcgaacgccgcctgctgcgcaac
atcgaacgcaccatgaagctgaccatccctgaagttgagctgccaaacgcagatctgctg
ggtgagcgccgcctggccaagtttgccgctaaagttcagcagcagctggaaagcagcgat
ctggatatgtaccgtgcgctgctggctaagctgcaaccgggtgaagatctagatatggaa
acgttggccgctgcactgctgaaaatggcgcagggcgaacgtcctctgatcctgccaccc
gatccagtgttcaaaccgcgtcaacgtcgtgagttcaacgaccgtgatgatcgcggtggc
gagcgtagcaacgaccgtcgtcgtgatgcacgtccagacagccgtgatggtggcgctgag
cgtccacgtcgcgaacgccgtgacgtgggtgaaatgcagctgtaccgcattgaagttggc
cgtgatgacggcgtggaagttcgtcatatcgttggcgcgatcgctaacgaaggtgacatc
agcagccgttacatcggtaacatcaagctgtttgcttcccactccaccatcgagctgcca
aaaggcatgccgggcgagatcctgaatcacttcactcgcactcgcattctgaacaagccg
atgaacatgcaactgctgggcgatgcacagccgcatgaacgtcgtgagcgtcctgccggt
ggtaacggtggtgagcgccgtggcggtgcccgtccattcaacggcgagcgtcgcgaaggt
gcaccagcaccacgccgttctttcggtgagcgtcgtgaaggcggtaatgctgccggtggc
gaacgccgtggcggtaacttcaaccgtgacaagccagcaccacgccgtgacgatgcagca
gctcctgccgcaccacgtcgccgtttcggtgatgcataa
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