Serratia fonticola GS2: AV650_11570
Help
Entry
AV650_11570 CDS
T04716
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sfg
Serratia fonticola GS2
Pathway
sfg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AV650_11570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfg03019
]
AV650_11570
Enzymes [BR:
sfg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AV650_11570
Messenger RNA biogenesis [BR:
sfg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AV650_11570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
AAA_22
Shikimate_DH
UvrD-helicase
Cas3-like_C_2
DUF5693
Motif
Other DBs
NCBI-ProteinID:
ALX94144
UniProt:
A0A0F7HDA6
LinkDB
All DBs
Position
2524109..2525482
Genome browser
AA seq
457 aa
AA seq
DB search
MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL
QLLSKHDHPIKGRRPVRALILTPTRELAAQIGENVEAYSKHLRLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLSKLPAK
RQNLLFSATFSDEIKGLASKLLTNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMI
GEGDWKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALPGYEPDPSIKAEPIINGRQAGGGRGAPRGNGGGAPRTGNGGGQRSGN
GGGQRENRGGGSARPQGDGKPRSGAPSRRPHSRKPSE
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaaaccctcggcttaagtgctgaaattctgcgcgctgttgaagaacagggc
tatcgcgaacctacgccaattcaacgccaggcaatcccggtggtattggcaggccgtgac
ctgatggccagcgcccagaccggcaccggtaaaacagctggttttaccttgccgctatta
cagctgctgagcaaacacgatcacccaatcaaaggccgccgcccggtgcgcgcgttgatc
ctgacgccaacccgtgaactggctgcacaaatcggtgaaaacgttgaggcttacagcaaa
cacctgcgcctgcgttcgctggtggtgtttggtggtgtgagcatcaacccgcagatgatg
aagctgcgcggcggcgttgacatcctggtggcaacgccgggtcgcctgctggatctggaa
catcagaacgcggttgatctgtccaaaattgaaattctggtgctggacgaagccgaccgc
atgctggatatgggctttatccatgatatccgccgcgtgctgtccaagctgcctgccaag
cgtcagaacctgctgttctccgcgaccttctccgatgagatcaaagggctggccagtaaa
ctgctgaccaaccctgcctcggtagaagtggctcgccgcaacaccgcatctgagcaaatt
gaacagagcgttcactttgtcgataagaagcgtaagcgtgaactgctttcccagatgatc
ggcgaaggtgactggaagcaggtgctggtatttaaccgtaccaagcacggtgccaaccat
ttggctgaacaactgaataaagatggcatcaccgctgcggctatccacggcaataaaagc
cagggcgcacgtacccgcgcactggccgactttaaagacggcaaaatccgtgtgctggta
gctaccgacatcgctgcgcgcggcctggatatcgatcagttgccacacgtggtgaactac
gaactgccaaacgtaccggaagattacgttcaccgcattggccgtactggccgtgccgaa
cgtaccggtgaggcgatctcgttggtctgcgtggatgaacacaaactgctgcgtgatatt
gagcgcctgctcaagcgtgaaattccacgcattgcgctgccaggctatgaaccggaccca
agcatcaaagccgaaccgatcatcaatggccgtcaggctggtggtggccgtggtgctcca
cgtggcaacggcggcggcgctccgcgtaccggtaacggtggcggccagcgtagtggcaat
ggcggcggtcagcgtgaaaatcgcggcggcggcagtgctcgcccgcagggtgacggcaaa
ccacgttcaggtgctccatcgcgccgtccgcatagccgtaaaccgtctgagtga
DBGET
integrated database retrieval system
