Serratia fonticola GS2: AV650_17495
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Entry
AV650_17495 CDS
T04716
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sfg
Serratia fonticola GS2
Brite
KEGG Orthology (KO) [BR:
sfg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfg03019
]
AV650_17495
Enzymes [BR:
sfg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AV650_17495
Messenger RNA biogenesis [BR:
sfg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AV650_17495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
NACHT
nSTAND3
T2SSE
PhoH
SLFN-g3_helicase
AAA_16
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ALX95238
LinkDB
All DBs
Position
complement(3809308..3813150)
Genome browser
AA seq
1280 aa
AA seq
DB search
MLRDQQRLQRRLQGARKVKSPEAQQAVAAEIAGDIAQAMLKVRSRAASCPKITYPESLPV
SQKKQDILAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVA
NRIADELETPLGGSVGYKVRFNDQVGENTLVKLMTDGILLAEIQQDRLLMQYDTLIIDEA
HERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSRHFNNAPIIEVSGRTYPVEVR
YRPVVDDADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALTKLNLPHTE
VLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSFRTK
VQRLPIEPVSQASANQRKGRCGRVSDGICIRLFSEQDFLSRPAFTDPEILRTNLASVILQ
MTSLGLGDIAAFPFVEAPDNRNIQDGVRLLEELGAIKTAENGHYQLTPQGRQLAQLPIDP
RLARMVLEAQKSGSVREMMIITSALSIQDPRERPMDKQQASDEKHRRFADKDSDFMAFVN
LWDYLKEQQKENSSSQFRRLCRNDFLNYLRVREWQDIYTQLRQVVKELGLPVNSVPSDYR
SVHTALLSGLLSHIGQKDADKQEFTGARNARFSIFPGSGLFKKPPKWTMVAELVETSRLW
GRIAARIEPEWIEPMAQHLVKHHYSEPHWSKSQGAVMASEKVTLFGLPIVAARPVNYSTI
DPLLCRELFIRHALVEGDWQTRHPFFAANLKLRAEVEELEHKSRRRDILVDDETLFSFYD
QRIPSDVVSGRHFDQWWKTTGKQNPELLNFEKEMLIKDGANKVSALDYPNYWYQGNLKLR
LTYQFEPGTDADGVTVHIPLPILNQVEEAGFEWQIPGIRRELVIALIKSLPKPMRRNFVP
APNYAEAFLGRATPLEMPLLDSLERELRRMTGVTVSREDWQWDQVPDHLKMTFRVVGEKH
KTLREGKDLAALRAQLKDKVQETLSAVADDGLEQSNLHIWSFGKLPEFYEQKRGGYSVKA
YPALVDEKDSVAIRLFDSEQEQQQAMWQGTRRLLLLNIPSPIKYLHEKLPNKAKLGLYFN
PYGKVLDLIDDCISCGIDKLIAEHGGPVWAEENFARLQELVRAELNETVVGVAKQVEQIL
TTVFNINKRLKGRVDISLALALSDIKAQLNGLVYRGFVTNNGWSRLPDTLRYLQAIERRL
EKLAIDPHRDRAQMIRVEQVQQAWQQWLNKLPPKRQQDEEVKAVRWMIEELRVSLFAQQL
GTPYPISEKRILQTIDQLSA
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgctccgtgatcagcagcgcctgcaacgccggttgcaaggtgcgcgcaaagtcaaaagc
cccgaagctcaacaggcggttgccgcagaaatagcgggtgatatcgcgcaagccatgctg
aaggtgcgctcccgcgcggcctcgtgcccgaaaatcacttacccggaaagcctgcctgtc
agccagaagaagcaggacattcttgccgccatccgcgatcatcaagtggtgatcgtggcg
ggtgaaaccggctcagggaagactacacagctaccgaaaatctgcctggagttagggcgc
ggcgtcaaaggcctgattggccacacgcaaccgcgccgcctggctgcacgcaccgttgcc
aaccgcattgccgatgagctggaaaccccgctgggtggcagcgtcggttacaaggtgcgc
ttcaacgatcaggtgggtgaaaataccctggtcaaactgatgaccgacgggatcttgctg
gccgaaatccagcaggatcgcctgctgatgcagtacgacaccctgatcatcgatgaggcg
cacgagcgcagcctgaacatcgatttcatcttgggttacctgcgggagctgttgccaaaa
cgcccggatttgaaggtgatcattacctcggccaccatcgatccgcagcgcttttctcgc
cacttcaacaatgcgccgatcattgaggtttctggccgtacctatccggtcgaggtacgt
taccggccagtggtggacgacgccgacgatactgaacgcgatcaacttcaggctatcttc
gacgcagtggacgaattggggcgtgaaggacctggtgatatcctgatctttatgagcggt
gaacgtgaaatccgtgacaccgccgatgcgctgaccaagctcaacctgccgcataccgag
gtgctgccgctgtatgcccgcctgtccaacagtgaacagaatcgggtgttccagtcgcac
catggccgccgcatcgtgctggcgaccaacgtggcagaaacttcgctgaccgtgccgggc
atcaagtacgttatcgacccaggtacggcgcgcatcagccgctacagcttccgtaccaaa
gtgcagcgcttgcctatcgaaccggtgtcgcaggcttctgctaaccagcgtaagggccgc
tgtggtcgtgtctcggacggtatatgtatccgcctgttctcggagcaggatttcctgtct
cgcccggcgtttaccgacccggaaatactgcgaaccaacctggcctcggtcatattgcag
atgacctcgctggggttgggcgatattgccgccttcccgtttgtcgaagcgccggataac
cgcaatattcaggacggtgtgcgcctgctggaagagttgggggccatcaaaaccgcggag
aacggccactaccagctgacaccgcaaggccgtcagttggcacagctgccgatcgaccca
cgtttggcgcggatggtgctcgaagcccagaaaagtggcagtgtacgcgagatgatgatc
atcacctcggcgttgtcgatccaggatccgcgtgagcggccgatggataagcaacaggcc
tccgatgaaaaacaccgccgttttgccgacaaagactccgattttatggcgttcgtcaac
ctgtgggattatctcaaggaacaacagaaggaaaactcttccagccagttccgccgcctg
tgccgcaacgatttcctcaactatctgcgggtacgtgaatggcaggatatctacacccaa
ctgcgccaggtggtgaaagagctgggcctgccggtcaacagcgtgccttcggactaccgc
agcgtacataccgcgctgctgagcggcctgctttcgcacattggccagaaggatgcggat
aagcaagagtttaccggtgcgcgcaacgcccgtttctccatcttcccgggctccgggctg
ttcaagaagccgccgaaatggacgatggtggcagaactggtggaaaccagccgcctgtgg
gggcgcattgccgcgcgtatcgagccagaatggattgagccgatggctcagcacctggtc
aagcatcattacagcgaaccgcactggtccaaatcccagggcgcggtgatggccagtgaa
aaggtcacgctgtttggtctgccgatcgtcgcagctcgcccggtgaattacagcaccatc
gatccgctgctgtgccgtgaactgtttatccgccatgcgctggtggaaggtgactggcaa
acgcggcacccgttcttcgctgccaacctgaagctgcgtgccgaagtggaagagctggaa
cataaatcgcgccgccgcgacattctggtggatgacgagacgctgttcagtttctacgat
caacgtattccgagcgacgtggtgtccgggcgtcattttgaccagtggtggaaaactacc
gggaagcagaaccctgagctgctcaacttcgaaaaagagatgttgatcaaggacggagcc
aacaaggtcagcgcgctggattatccgaactactggtatcagggcaacctcaagttgcgg
ctgacctaccagtttgagccgggtaccgacgccgatggcgttaccgtgcacatcccgttg
ccgatcctcaatcaggtggaagaggccggttttgagtggcaaatccccggtatccgccgt
gaactggtgatcgcgttgatcaaatcgttgcctaagccgatgcgccgcaattttgtgcca
gccccgaactacgctgaagctttccttggccgggcaacgccattggagatgccgctgctg
gattcgctggaacgcgagctacgccgcatgactggtgtgacggtgtcacgtgaggattgg
cagtgggatcaggtgcccgatcatctgaaaatgaccttccgcgtggtgggtgagaaacac
aaaaccctgcgcgaaggtaaagatctggccgcgctgagggcccagctcaaagacaaggtg
caagagacgctgtcggccgtggctgatgatggtctggaacagagcaatctgcatatctgg
agctttggcaaactgcctgagttttatgagcagaagcgtggcggttactcggtcaaggct
tacccggcgctggtggacgaaaaagacagcgtagccatccgcctgtttgacagcgaacag
gagcagcagcaggccatgtggcaaggtacgcgccgtttgttgctgttgaacatcccgtcg
ccgatcaaatatctgcatgagaagttgccgaacaaggccaagcttgggctgtatttcaac
ccgtatggcaaagtgctggatctgatcgacgactgtatctcctgcggcatcgacaagctg
attgccgaacacggcgggccggtgtgggcggaagaaaactttgcccggctgcaagagttg
gtgcgggccgagctgaacgaaaccgttgtgggcgtggccaaacaggtggaacagatcctg
acgacggtcttcaacatcaacaagcgtctgaaagggcgcgttgatatctcgttggcgttg
gcgctgtccgatatcaaggcccagctcaatggcctggtttaccgtggttttgtcaccaat
aacggttggagccgcctaccggacaccttgcgttatctgcaagcgattgagcgccgcctg
gagaagctggcgatcgatccgcaccgcgatcgcgctcagatgatccgggtggagcaggtc
caacaggcgtggcagcagtggctgaacaagctgccgccaaaacgccagcaggatgaagag
gtaaaggcggtacgctggatgattgaggagctgcgcgttagcctattcgctcagcagttg
ggtacgccttacccgatttctgagaagcgtatcttgcagaccatcgatcagctctctgcg
taa
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