Serratia fonticola GS2: AV650_17695
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Entry
AV650_17695 CDS
T04716
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
sfg
Serratia fonticola GS2
Brite
KEGG Orthology (KO) [BR:
sfg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfg03016
]
AV650_17695
Enzymes [BR:
sfg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AV650_17695
Transfer RNA biogenesis [BR:
sfg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AV650_17695
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
ODP
Motif
Other DBs
NCBI-ProteinID:
ALX97276
LinkDB
All DBs
Position
3856663..3858597
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRI
VATLHTEKEREIAEPETLVEPFLSRFVGRVQKKDDRLSIIPDHPLLKDAIPCRPAREVTH
NFQAGDWAVAEMRRHPLNGDRTFNADLTQFITDGEDHFAPWWVTLARHNLEKEAPDMVAI
SEQETALIREDLTALDFVTIDSASTEDMDDALHVQDNGDGSLLLTIAIADPTAYVEQGSN
LDEIARKRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRSVLACRVTIAADGALGNDIHF
FAAEIESKAKLVYDEVSDWLDGVAGWQPPSESIAQQITLLKQVCDARSAWRHQHALVFKD
RPDYRFVLGEKGEVLDIVTEQRRTANRIVEECMIAANVCAALVLRDRLGFGIYNVHNGFD
PALVEQAVAVLQANGVEADAEKLLTLEGFCELRRHLDSQPTQFLDSRIRRFQTFAEISTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIISEQAAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARFLKDKAGTDERFNAEIIDVTRGGLRVRLLDNGAMAFIPAPFIHAVRDE
MVCSQETGTVQVKGEVIYRQSDSLQVNIAEVRMETRSVIARPVA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagcttaaacagcaacttcactctcaaaccccg
cgtgttgaaggcgtagtaaaagggactgagaaaggttttggctttttagaagtcgacggg
cagaaaagttactttattccgccgccgtacatgaaaaaagtcatgcatggggatcgtatc
gtcgccaccctgcataccgaaaaagagcgcgaaatcgctgaaccggaaaccctggttgag
cctttcctgtcgcgctttgttggccgggtgcagaaaaaagacgatcgcctgtcgattatc
cccgatcatccgttgctgaaagacgcgatcccatgccgtccggcgcgtgaagtcacccat
aacttccaggccggtgactgggccgtcgcagaaatgcgccgtcatccactgaacggcgat
cgcactttcaatgccgatctgactcagttcatcaccgacggtgaagatcacttcgcgccg
tggtgggtcacgctggctcgtcataatcttgaaaaagaagcgccagacatggtcgcgatc
tccgaacaagagaccgctctgatccgtgaggacctgaccgcgctggacttcgtcaccatc
gatagcgccagcaccgaagatatggacgatgcgctgcacgtgcaagacaacggtgacggc
tcgctgctgttgaccatcgccattgccgatcctaccgcctacgtcgagcaaggcagcaat
ctggatgaaatcgcccgcaagcgcgcgttcaccaactacctgccgggcttcaatattccg
atgttgccgcgcgatctgtccgacaacctgtgctcgctgcgcccgaatgaacgccgctcg
gtgctggcttgccgcgtgactatcgccgcagacggtgcgctgggcaacgatatccatttc
tttgccgccgaaatcgagtccaaagccaaactggtttatgacgaggtttctgactggctg
gatggcgtcgcaggctggcaaccaccgagcgagagcatcgcacagcagatcaccttgctt
aaacaggtttgcgatgcacgcagcgcctggcgccatcagcatgcgctggtattcaaggat
cgcccggactatcgctttgtcctcggcgagaaaggcgaagtgctggacatcgtgaccgaa
cagcgccgcaccgccaaccgtattgttgaagagtgcatgatcgccgccaacgtctgtgcc
gccctggtgctgcgcgatcgtctgggctttggcatctataacgtgcataacggctttgat
ccggccctggttgagcaagcggtcgccgtattgcaggccaacggcgttgaagccgatgcc
gagaagctgctgaccctggaaggattctgcgaactgcgccgtcacctcgactcgcagcca
acccagttcctggacagccgcatccgccgcttccagacctttgccgagatcagcaccacg
cctggcccgcacttcggtctggggctggaggcgtacgccacctggacctctccgatccgt
aagtatggcgatatggtcaaccatcgtctgctgaaagccattattagcgagcaggcagcg
gaaaaaccgcaggacgacgtcaccgtgcaactggccgagcgtcgccgtttgaaccgcatg
gcagagcgcgacgttggtgactggttgtatgcccgtttcctcaaggataaggccggaacc
gatgaacgtttcaacgccgagatcatcgacgtaacccgtggtggcctgcgcgtacgcctg
ttggacaacggcgcgatggcctttatccctgccccgtttatccacgcggtgcgcgacgag
atggtgtgtagccaagagaccggcaccgtgcaggtgaagggcgaagtcatctatcgccaa
agcgatagtctgcaggtgaacattgccgaagtacgcatggaaacccgcagcgtaatcgcc
agaccggtggcctaa
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