Serratia fonticola GS2: AV650_18360
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Entry
AV650_18360 CDS
T04716
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sfg
Serratia fonticola GS2
Brite
KEGG Orthology (KO) [BR:
sfg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfg03016
]
AV650_18360
Enzymes [BR:
sfg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
AV650_18360
Transfer RNA biogenesis [BR:
sfg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AV650_18360
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ALX97284
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All DBs
Position
complement(3993155..3994276)
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AA seq
373 aa
AA seq
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MNYQLITTDAGLQQVCEQARNYAQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPI
KQWQPFIDLLADTAVVKFLHAGSEDLEVFLNAFKTLPTPMVDTQILAAFSGHTLSCGFAK
LVTEYMKVDLDKSESRTDWLARPLTERQCVYAAADVFYLLPMAKQLVQETEEAGWTAAAD
NECRLLCQRRSEALAPELAYREITNAWQLRPRQLACLQKLAEWRLRQARERDLAVNFVVR
EENLWAVARYMPGSLGELEALGLSGPEIRYHGKTLVALVAEANALEESALPVPLSNLVDH
PGYKKVFKEIKAAITLVSEQSGLSVELLASRRQINQLLNWHWKLKESESLPELISGWRGE
LLAAPLQAILQDY
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgatcactaccgacgccggattgcagcaggtctgcgagcaggcaaga
aactacgcccaggtggcgctggataccgagttcgtccgcacgcgtacctattatccgcag
ttaggcctgatccagttatatgatggtgaacaactttccctgatcgatcctctccccatc
aagcagtggcaaccctttatcgacctgctggccgataccgccgtcgtgaaattcctgcac
gctggtagcgaagatcttgaggtgtttctgaacgccttcaagacgctgccgacaccgatg
gtcgatacccaaatcctggcggccttcagcggccatacgctgtcctgtggctttgccaag
ctggtgacggagtacatgaaggtcgatctcgataagagtgaatcgcgtaccgactggctg
gcgcggccattgaccgagcgccaatgcgtttatgccgcagctgatgtgttctacctgttg
ccgatggccaagcaactggtgcaggagaccgaggaggcgggttggaccgctgcagccgat
aacgagtgccgtttgctctgccaacggcgcagtgaggcgctggcgccagaattggcctat
cgcgaaatcaccaatgcctggcagttacgtccgcgccagttggcttgcctgcaaaaactg
gccgagtggcgtttacgtcaggcgcgtgaacgcgatctggcggtgaactttgtcgtgcgt
gaagagaacctatgggccgtggcgcgctatatgccgggttcgctgggtgaactggaggcg
ctggggctgagtggcccggagatccgctatcatggtaaaaccctggtggcgctggtggcg
gaggctaacgctctcgaagaatcagccttgccggtaccgttgagtaatctggtcgatcat
cctggctataagaaagtgttcaaagagattaaggctgccattacgttggtgagtgagcag
agtggccttagcgtcgaactgctggcttcgcggcggcagattaaccagttgctgaattgg
cactggaaattgaaagagagcgagtcgctgccggagttaatcagtggttggcgtggtgag
ctattggccgcgccgttgcaggcgatcctacaggattattaa
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