Serratia fonticola GS2: AV650_24670
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Entry
AV650_24670 CDS
T04716
Symbol
recD
Name
(GenBank) exonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
sfg
Serratia fonticola GS2
Pathway
sfg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AV650_24670 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfg03400
]
AV650_24670 (recD)
Enzymes [BR:
sfg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AV650_24670 (recD)
DNA repair and recombination proteins [BR:
sfg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AV650_24670 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
AAA_22
UvrD-helicase
SH3_13
PhoH
SLFN-g3_helicase
nSTAND3
AAA_16
T2SSE
CbiA
UvrD_C
AAA_28
Herpes_Helicase
Phageshock_PspD
FtsK_SpoIIIE
SRP54
Flavi_DEAD
TrwB_AAD_bind
AAA
AAA_17
NTPase_1
ATPase
Motif
Other DBs
NCBI-ProteinID:
ALX96531
LinkDB
All DBs
Position
complement(5370404..5372254)
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AA seq
616 aa
AA seq
DB search
MIEILHQALALGALRPLDVQFAQVVANDDEPDILLAAACLSSEAGAGHVCLLLEQLLPEN
LFGGRQPELALAAWQACGQPDVASWQQRLAVSPAISDGSTATPMVLQQQRLYLQRMWQSE
GDVATFISSDSVPQELEEAQLRTILDRLFGAATDEPDWQKIAAAVAATRRIAIISGGPGT
GKTTTVAKLLAALVQLAAGERLRIQLAAPTGKAAARLTESLGSASRQLDLTPEQRALFPT
EAATLHRLLGAQPNSQRMRYHRGNPLHLDVLIVDEASMVDLPMMARLIAALPPKARVIFL
GDRDQLASVEAGAVLGDICRFAEQGYSETRAAQLSRLTGCPLQGQPAQAEAAVRDSLCLL
RKSYRFDAKSGIGQLALAVNAGDSKRALAALNGSYADVAGYPLAETEDYQRLLDNCVAGY
RDYLRLVAEGAGAVTILDAFGRFQLLCALREGPFGVAGLNERIESGLQRAGLIRRNPGPA
GRWYLGRPVMIGRNDSALGLFNGDIGIALPGEGGDLRVHFQLPDGSIKSVQPSRLPAHET
AYAMTVHKSQGSEFDHTALVLPNHFLPVLTRELVYTAITRARQRLSLYAVDKVLISAIRT
PTQRRSGLAERLQIGK
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgattgagattttgcatcaggcgttggctctgggcgccttgcgaccgctggacgttcaa
tttgcccaggtggtcgccaacgatgatgagccggatattctgctggccgccgcctgcctg
agctcggaggccggtgcgggccacgtttgtctgttgctcgaacaattattgccggaaaat
ctgtttggtggccgccagccagagttggccttggctgcctggcaggcctgcgggcaaccg
gacgtggcgagttggcaacagcgtctggcggtctcgccagcgattagcgatggcagtacg
gcaacgccgatggtactgcaacagcagcggctgtatctgcaacgcatgtggcagagcgaa
ggtgacgtcgccacttttatcagcagcgacagcgtgccacaggaacttgaagaagcgcag
ctgcgcaccatcctcgatcggttatttggcgcagccacggacgaacctgattggcaaaaa
attgccgcagcggtagcggccacgcgccgcatcgcgattatttccggcggccccggtact
ggtaaaaccacaaccgtcgctaagctgttggcggcgctggtgcagttggcggccggggag
cgtttgcgtatccagcttgctgcgcctaccggtaaagcagcggctcgactaaccgaatcc
ttgggaagcgctagccgtcagttggacttaaccccggagcaacgtgccttgtttcctacg
gaagcggcgacgttacaccgcttgctgggggcccagccaaacagccaacgcatgcgctat
caccgggggaacccgctgcatcttgatgtgctgatagtggacgaggcttcgatggtggac
ttgcccatgatggcaaggttgattgccgccttaccccccaaggcgcgagtcatcttcctt
ggcgatcgcgatcaactggcctcggtggaggctggagccgtgctgggggatatctgccgg
tttgccgagcagggatatagcgaaacccgtgcggcacagttgtcgcgcctgaccggttgc
cccttgcaagggcagccagcgcaggccgaggcagcggtgcgcgatagcctgtgcctgctg
cgcaagagttaccggtttgatgccaaatccggcattggccagttggctttggcggtgaat
gctggcgatagcaagcgcgccctggcggcgttgaatggcagctatgccgacgtggcgggt
tatccgctggcagaaaccgaagattatcaacggctgttggataactgcgttgctggttat
cgcgactatctgcggctggtagcagaaggggcgggggccgtaacgatcctggatgccttt
ggccgtttccagttgctctgcgcactgcgcgaagggccatttggcgttgccgggttgaat
gagcgtatcgaaagtgggttgcagcgtgccggtttgattcggcgtaatcctggccccgcc
ggtcgctggtatttagggcggccggtgatgattggccgtaatgatagcgcgctggggctg
tttaacggcgatataggcattgccttgcccggtgagggcggcgatctgcgcgtgcatttc
caattaccggacggcagcatcaaatcggtacagcctagccgcttacctgcgcatgaaacc
gcctatgcgatgacggtgcataaatcacagggttcggagttcgaccacacggcgctggtg
ctgccgaatcattttctgccggtactgacccgcgaattggtttataccgccattacccgc
gcgcgccagcggttgtcgctctatgcggtagacaaggtgttgataagcgctatccgcacc
cccacgcagcgccgcagcggcttggcagaacgtttgcagattgggaaataa
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