Serratia fonticola GS2: AV650_25000
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Entry
AV650_25000 CDS
T04716
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sfg
Serratia fonticola GS2
Pathway
sfg03410
Base excision repair
sfg03430
Mismatch repair
sfg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AV650_25000
03430 Mismatch repair
AV650_25000
03440 Homologous recombination
AV650_25000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfg03400
]
AV650_25000
DNA repair and recombination proteins [BR:
sfg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AV650_25000
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AV650_25000
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AV650_25000
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF2065
Motif
Other DBs
NCBI-ProteinID:
ALX96593
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Position
complement(5450640..5452373)
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AA seq
577 aa
AA seq
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MSIKTQLRRREAADASHLPASLPPLLRRLYALRGVKGEQELERSVKGMLPWQQLSGIDAA
VAILQQALADGRRIMVVGDFDADGATSTALTVLALRSMGCSSIEYLVPNRFEDGYGLSPE
VVEQAAARGAELIVTVDNGISSHAGVDVAHGLGIQVLVTDHHLPGDTLPAAEAIVNPNLR
DCDFPSKSLAGVGVAFYLMLALRAKLRDSGWFEQRALAMPNLAELLDLVALGTVADVVPL
DANNRILVYQGLNRIRAGKCRPGIRALLEVANRDARQLAASDLGFALGPRLNAAGRLDDM
SIGVAMLLSDDIAQARMLANDLDALNQTRREIEQGMQVEALELCDQLERTTTALPYGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGILKGSGRSVAGLHMRDALERLDTLNP
GLMMKFGGHAMAAGLSLEEAKFDEFRQRFGELVGEWLDPAMLEGVIWSDGELMMQELTLT
TAELLREGGPWGQAFPEPTFDGKFRILQQRLVGEKHLKLMIEPLGGGPLLDGIAFNVDTT
QWPDSSIKEVELAYKLDVNEFRGNRNVQLLIQHLWPR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgagtattaaaacccaattacgccgccgcgaggcggcagatgccagccatttacccgcc
agcctgcctcccctgttgcgtcgcttatacgcgttgcgcggagttaagggcgagcaggag
ctggagcgtagcgtcaagggcatgttgccttggcaacagttgagcggtatcgatgctgcg
gtagcgatattgcagcaggcactggccgacggtcgccgcatcatggtggtgggcgacttt
gacgccgacggcgccaccagtaccgcactgacggtgctggccttgcgtagcatgggctgt
agctctatcgaatatctggtgcccaaccgttttgaagatggctatggccttagccccgaa
gtagtggaacaggcggcggctcggggtgctgagctgatcgtcacggtcgataacggtatc
tcctcgcatgcgggcgttgacgttgcgcacggtttgggaatacaggtgctggtcaccgat
caccatctgccgggtgatacgctgcctgcggcagaggcgatcgttaacccgaacctgcgt
gactgcgattttccctccaaatctttggcaggcgtaggcgttgccttctatctgatgttg
gctttgcgggccaagctgcgtgacagcggctggttcgaacagcgtgcgctggctatgcct
aatctggccgaactgctggatctggtggcgttgggcacggtggcggacgtggtgccgctg
gatgccaacaaccgtattctggtgtatcaggggctgaaccgcatccgggctggcaagtgt
cggccaggtattcgagctctgctggaagtggctaaccgcgatgcgcggcaattggcggcc
agcgatctcggctttgctcttgggccacggctgaacgcggcagggcggctggacgatatg
tcgatcggcgtagccatgctgttgagcgacgatattgcccaggcgcgtatgctggccaat
gatctcgacgcgctcaaccagacccggcgtgagattgagcaggggatgcaggtggaagcg
ctggagctgtgcgatcagttggaacgcaccaccaccgcattgccctacgggttagcgatg
tatcacccagagtggcatcagggcgtggtgggcattctggcttcacgcatcaaagagcgt
ttccatcgcccggtgatcgcttttgcccctgcgggcgacggcattctgaaaggttctggc
cgctcggtggccgggttgcatatgcgtgatgcgctggagcggctcgataccctgaatcct
gggctgatgatgaagttcggcggccatgcgatggcggcgggcttgtcgctggaagaggcc
aagtttgacgagttccgccagcgttttggcgagctggtcggcgaatggctcgatccagcc
atgctggaaggcgtgatctggtcggacggcgagttgatgatgcaagaactgaccctgacc
accgcggagcttctgcgtgagggcgggccttgggggcaggcgtttcctgagccaaccttt
gacggcaagttccgtattctgcaacagcggctggtgggcgaaaaacacctgaagctgatg
atcgaaccgctcggtggcggcccattgttggacggcatcgccttcaatgtcgacaccaca
cagtggcctgacagcagcatcaaagaagtggaactggcgtacaaactggatgtgaacgag
ttccgtggcaaccgtaacgtgcagttgctcattcagcacctctggccgcgttaa
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