Sinorhizobium fredii HH103: SFHH103_01001
Help
Entry
SFHH103_01001 CDS
T01731
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sfh
Sinorhizobium fredii HH103
Pathway
sfh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFHH103_01001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfh03019
]
SFHH103_01001
Messenger RNA biogenesis [BR:
sfh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SFHH103_01001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
CCE95500
UniProt:
G9A444
LinkDB
All DBs
Position
1086486..1088153
Genome browser
AA seq
555 aa
AA seq
DB search
MAQEEELVFLPLGGVGEIGMNLGLYGYGRPGSRQWIMVDCGVTFPGPELPGVELVLPDIS
FLAEERRNLKAIIITHAHEDHYGALNDLWPGLNVPVYASPFTAGMLEAKRDFEKSRGEIP
ITVFKAGDRINVGPFSIEAIGVNHSIPEPMSLVIRTPLGTVVHTGDWKIDLEPSLGPITN
EARFRQVGEEGVLALVCDSTNALRDGVSPSEREVSESLAKIIADAEGRVGITTFSSNVGR
IRSVAEAAEAAGREVLLLGSSMKRVVNVAKDLGIMEGLKPFLAEDEFGYIPRDKVVVILT
GSQGEPRAALAKIARDEMRNVAFSAGDTIVFSSRTIPGNEKAINDIKNGLIEQGIHIVTD
SEALVHVSGHPRRNELQQMYQWLKPEIVVPVHGEAAHLTAHAELALHSGIASVPRLRNGA
ILRLAPGPAGVIDEARHGRIYKDGTLIGDFDEMGIGERRKLSFAGHVSVNVVLDNRYDFL
GDPDVVPIGLPQFDDEGDDMDDVLYDAVLGAVESIPRVKRKDLSMLQEAVRRAVRSTANQ
IWGKKPIVTVFVTKV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagaagaagaattggtgttcttgccgctcggcggcgttggcgaaatcggcatg
aaccttggcctttatggctacggcaggcctggcagccgtcaatggatcatggtcgattgc
ggcgtgacctttcccggtccggaactgcccggcgtggaactcgtcctgccagatatctcc
ttccttgccgaggagcgccgcaatctcaaggcgatcatcatcacgcatgcccacgaggat
cactatggcgcgctgaacgatctgtggccgggactgaacgttccggtctatgcctcgccg
ttcaccgccggcatgctcgaggcaaagcgcgacttcgaaaagagccgcggcgaaattccg
atcaccgtcttcaaggcgggcgaccgcatcaatgtcgggcccttcagcatcgaagcgatc
ggcgtcaaccattccattcccgagccgatgtcgctggtgatccgtacgccgctcggcact
gtcgtgcatacgggtgactggaagatcgacctcgaaccctcgctcggcccgatcaccaat
gaagcgcgttttcgtcaggtgggggaagagggcgtgctggcgctcgtctgcgactcgacc
aatgcgctgcgcgacggcgtttcgccgtccgagcgggaagtctcggaaagcctggcgaag
atcatcgcggacgccgaggggcgcgtcggcatcacgaccttttcgtcgaatgtcggccgc
atccgctcggttgcggaggctgcggaagcggccggccgcgaagtgctcctgctcggcagt
tcgatgaagcgggtcgtcaacgttgcaaaggatctcggcatcatggaggggctgaagccg
ttcctggcggaggacgaattcggctatatcccgcgcgacaaggtcgtcgtcatcctgacg
gggagccagggagagccgcgcgccgcactcgccaagatcgcccgggatgaaatgcgcaat
gtggcgttctcggccggcgacaccatcgtcttctcgtcgcgcaccatccccggcaacgag
aaggcgatcaacgatatcaagaacggcctcatcgaacaggggatccatatcgtcaccgac
agcgaagcgctggtgcacgtgtccggccatccgcgccgcaacgagttgcagcagatgtat
caatggctgaagcctgagatcgtcgtgccggtgcatggcgaggcggcgcatctgacggcg
catgctgagcttgcgctgcattcgggcatcgcgagcgtaccgcggctgcgcaacggcgcg
atcctgcgccttgcgcccggtccggccggagtaatcgacgaggcacggcacggtcgcatc
tacaaggatgggacgctgatcggcgatttcgacgagatgggcattggcgaacgccgcaag
ctctcctttgccggccacgtctccgtcaacgtcgtgctcgacaaccgctacgacttcctc
ggcgatcccgacgtcgtgccgatcgggctcccgcaattcgacgacgagggcgacgacatg
gacgacgtgctctacgacgccgtgctcggcgcggtggaaagcattccgcgcgtcaagcgc
aaggatctgtcgatgctgcaggaagcggtccggcgcgccgtgcgcagcacggccaaccag
atctggggcaagaagccgatcgtcacggtctttgtcaccaaagtctga
DBGET
integrated database retrieval system