KEGG   Sinorhizobium fredii HH103: SFHH103_01001
Entry
SFHH103_01001     CDS       T01731                                 
Name
(GenBank) hypothetical protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
sfh  Sinorhizobium fredii HH103
Pathway
sfh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sfh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SFHH103_01001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sfh03019]
    SFHH103_01001
Messenger RNA biogenesis [BR:sfh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SFHH103_01001
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B_2 RNase_J_C Lactamase_B RMMBL Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: CCE95500
UniProt: G9A444
LinkDB
Position
1086486..1088153
AA seq 555 aa
MAQEEELVFLPLGGVGEIGMNLGLYGYGRPGSRQWIMVDCGVTFPGPELPGVELVLPDIS
FLAEERRNLKAIIITHAHEDHYGALNDLWPGLNVPVYASPFTAGMLEAKRDFEKSRGEIP
ITVFKAGDRINVGPFSIEAIGVNHSIPEPMSLVIRTPLGTVVHTGDWKIDLEPSLGPITN
EARFRQVGEEGVLALVCDSTNALRDGVSPSEREVSESLAKIIADAEGRVGITTFSSNVGR
IRSVAEAAEAAGREVLLLGSSMKRVVNVAKDLGIMEGLKPFLAEDEFGYIPRDKVVVILT
GSQGEPRAALAKIARDEMRNVAFSAGDTIVFSSRTIPGNEKAINDIKNGLIEQGIHIVTD
SEALVHVSGHPRRNELQQMYQWLKPEIVVPVHGEAAHLTAHAELALHSGIASVPRLRNGA
ILRLAPGPAGVIDEARHGRIYKDGTLIGDFDEMGIGERRKLSFAGHVSVNVVLDNRYDFL
GDPDVVPIGLPQFDDEGDDMDDVLYDAVLGAVESIPRVKRKDLSMLQEAVRRAVRSTANQ
IWGKKPIVTVFVTKV
NT seq 1668 nt   +upstreamnt  +downstreamnt
atggcgcaagaagaagaattggtgttcttgccgctcggcggcgttggcgaaatcggcatg
aaccttggcctttatggctacggcaggcctggcagccgtcaatggatcatggtcgattgc
ggcgtgacctttcccggtccggaactgcccggcgtggaactcgtcctgccagatatctcc
ttccttgccgaggagcgccgcaatctcaaggcgatcatcatcacgcatgcccacgaggat
cactatggcgcgctgaacgatctgtggccgggactgaacgttccggtctatgcctcgccg
ttcaccgccggcatgctcgaggcaaagcgcgacttcgaaaagagccgcggcgaaattccg
atcaccgtcttcaaggcgggcgaccgcatcaatgtcgggcccttcagcatcgaagcgatc
ggcgtcaaccattccattcccgagccgatgtcgctggtgatccgtacgccgctcggcact
gtcgtgcatacgggtgactggaagatcgacctcgaaccctcgctcggcccgatcaccaat
gaagcgcgttttcgtcaggtgggggaagagggcgtgctggcgctcgtctgcgactcgacc
aatgcgctgcgcgacggcgtttcgccgtccgagcgggaagtctcggaaagcctggcgaag
atcatcgcggacgccgaggggcgcgtcggcatcacgaccttttcgtcgaatgtcggccgc
atccgctcggttgcggaggctgcggaagcggccggccgcgaagtgctcctgctcggcagt
tcgatgaagcgggtcgtcaacgttgcaaaggatctcggcatcatggaggggctgaagccg
ttcctggcggaggacgaattcggctatatcccgcgcgacaaggtcgtcgtcatcctgacg
gggagccagggagagccgcgcgccgcactcgccaagatcgcccgggatgaaatgcgcaat
gtggcgttctcggccggcgacaccatcgtcttctcgtcgcgcaccatccccggcaacgag
aaggcgatcaacgatatcaagaacggcctcatcgaacaggggatccatatcgtcaccgac
agcgaagcgctggtgcacgtgtccggccatccgcgccgcaacgagttgcagcagatgtat
caatggctgaagcctgagatcgtcgtgccggtgcatggcgaggcggcgcatctgacggcg
catgctgagcttgcgctgcattcgggcatcgcgagcgtaccgcggctgcgcaacggcgcg
atcctgcgccttgcgcccggtccggccggagtaatcgacgaggcacggcacggtcgcatc
tacaaggatgggacgctgatcggcgatttcgacgagatgggcattggcgaacgccgcaag
ctctcctttgccggccacgtctccgtcaacgtcgtgctcgacaaccgctacgacttcctc
ggcgatcccgacgtcgtgccgatcgggctcccgcaattcgacgacgagggcgacgacatg
gacgacgtgctctacgacgccgtgctcggcgcggtggaaagcattccgcgcgtcaagcgc
aaggatctgtcgatgctgcaggaagcggtccggcgcgccgtgcgcagcacggccaaccag
atctggggcaagaagccgatcgtcacggtctttgtcaccaaagtctga

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