Sinorhizobium fredii HH103: SFHH103_01009
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Entry
SFHH103_01009 CDS
T01731
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sfh
Sinorhizobium fredii HH103
Pathway
sfh03030
DNA replication
sfh03430
Mismatch repair
sfh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SFHH103_01009 (dnaE)
03430 Mismatch repair
SFHH103_01009 (dnaE)
03440 Homologous recombination
SFHH103_01009 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfh03032
]
SFHH103_01009 (dnaE)
03400 DNA repair and recombination proteins [BR:
sfh03400
]
SFHH103_01009 (dnaE)
Enzymes [BR:
sfh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SFHH103_01009 (dnaE)
DNA replication proteins [BR:
sfh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SFHH103_01009 (dnaE)
DNA repair and recombination proteins [BR:
sfh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SFHH103_01009 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
CCE95508
UniProt:
G9A4L4
LinkDB
All DBs
Position
1094725..1098219
Genome browser
AA seq
1164 aa
AA seq
DB search
MAGNESIGQGAAGVDPQFVHLRVHSAFSLLEGALPLKKIIAKAVADEQPAIGIADTNNLF
AALEFSQKAADDGLQPIIGCQLAIDMEDEAEGERRSHAQQLAKLPSIVLIAATDAGYTRL
VDLVSRAYLEGEGHQAVRITRSWLVAGGTDGLIALTGAGSGPVDLALKAGSAALAEARLK
ALVELFGNRLYVELQRHGSYDRRQENRLVDLAYRYDIPLVATNEAFFPSPADYDAHDALM
AVAHNAVVSDDRRFRLTSDHYLKSRKEMAALFADLPEALENTVEIARRCSFMLKTRGPIL
PRFTGASDDPVEAERAESAELRRQADEGLEQRLSRLGMAPGYKEEDYRERLAFELGVIER
MKFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNP
ERVSMPDFDIDFCQDRREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYG
QVDKICKLVPNNPANPTPLSKAIEEEPRLQEEAEKEPVVGRLLDIAQKIEGLYRHASTHA
AGIVIGDRPLSQLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFV
AKRGIAVDLASIPLDDPKTYEILSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVAL
YRPGPMENIPVYNARKHGEEEIESIHPKIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGE
ADLLRRAMGKKIKEEMDKQRARFVEGAVGNGVVKPQADLIFDLLAKFANYGFNKSHAAAY
AIVSYQTAYMKAHYPVEFLAASMTLDMSNTDKINDFRQDAMRLGIQVIAPSVQTSFRPFE
TGDNRIYYSLAAIKGVGESAVDHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFESLIAAG
AFDCFGYDRAELIGGLDRVLGFAQRAQENKLSGQSDMFGAGAATGPEKIALPTYTPWLAS
EKLHREFQVLGFYLSAHPLDTYNKLLAKMRVQTFTDFSAAVKQGASAGRLAGTVTSKQER
KTRTGNKMGIVAFSDASGQFEAVLFSEMLNQYRDLLEAGKSLVMTVDAEERPEGIGLRIR
TLRSLEEESLQMQKALRVYVRDCGPLRSIASHLNAKGDGLVSFIVIKDNGQREIEVELSE
KYRISPEIAAALRSAPGVVDVELV
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcaacgaaagcattgggcagggcgcggcgggcgtggatccgcaattcgttcac
ctgcgcgtgcattcggcattctcgctgctggaaggcgcgctgccgctgaagaagatcatc
gccaaggcggtggccgacgagcagccggccatcggcattgccgataccaacaacctgttc
gcggcgctggagttctcccagaaggcggcggacgacggactgcagccgatcatcggctgc
caactcgccatcgacatggaggacgaggcggagggggagcggcgcagccatgcgcagcaa
ctcgccaagctgccttcgatcgtcctgattgctgcgaccgacgcgggctatacacgcctt
gtcgacctggtcagccgggcctatctcgaaggcgaaggtcatcaggcggtgcggataacg
cgctcctggcttgtggctggcggcaccgatggtctgattgccttgaccggtgccggcagt
ggccccgtcgacctggcgctgaaagccggctcggccgccctggccgaggcgcgcctcaag
gcgctggtcgagctgttcggcaatcgtctctatgtcgaactgcagcggcacggcagttac
gatcgacgccaagaaaatcgcctggtcgaccttgcctatcgctacgacataccgctcgtt
gcgacgaatgaggccttcttcccgtctccggccgactatgatgcgcatgatgcgctgatg
gccgttgcccacaacgccgtcgtctccgatgatcgccgattccggttgacgtcggatcac
tatttgaagagccgcaaggagatggcggcgctctttgccgatctgccggaggcgctggaa
aataccgtcgagatcgcccgccgctgctccttcatgctgaagacccgcgggccgatcctg
ccgcgcttcaccggcgcctccgacgatccggtggaggccgagcgcgccgagtccgcggag
cttcgccggcaggcggacgaggggctggagcagcgcctgtccaggcttggcatggcgccc
ggctacaaggaagaggactatcgcgagcgcctggccttcgaactcggcgtcatcgagcgg
atgaagttccccggctacttcctgatcgttgcggacttcatcaaatgggcgaagcagcat
gacatcccggtcggcccgggccgcggctcgggggccggctcgctggtcgcctatgcgctg
acgatcaccgacgtcgatccgatgcgcttctcgctgctcttcgagcgcttcctcaatccg
gagcgcgtgtcgatgccagacttcgacatcgacttctgccaggaccgccgtgaagaggtg
atccgctacgtccagcaaaaatacggccgcgagcaggtggcgcagatcatcaccttcgga
tcgctgcaggcgcgcgccgcgctgcgtgacgtcggacgcgtgctggaaatgccctatggc
caggtcgacaagatctgcaagctggtgccgaacaatccggccaacccgacgccgctgtct
aaggcgatcgaggaggagccgcgccttcaggaagaggcggaaaaggagccggtcgtcggc
cggctgctcgacatcgcacagaagatcgagggcctctaccgccacgcctcgacgcacgcg
gcgggcatcgtcatcggcgaccggccgctgtcgcaactggtgccgatgtatcgcgacccg
cgctccgacatgccggtcacccagttcaacatgaaatgggtggagcaggccggcctcgtc
aagttcgacttccttggtctgaagaccctgacggtgctgaagacggcagtcgacttcgtc
gcaaagcgcggcattgcggtcgatcttgccagtatcccgctcgacgatccgaagacctac
gagattctctcccgcggcgagacggtcggggtgttccaagtggaaagcgccggcatgcgc
aaggcgctgatcggcatgcggcccgactgcatcgaggacatcatcgcgctggtcgcgctg
taccggccgggtccgatggagaatatcccggtctacaacgcccgcaagcatggcgaagag
gaaatcgaatcgatccatccgaaaatcgaccatctgctcaaggagactcaaggggttatc
gtctatcaggaacaggtgatgcagatcgcccaggtgttgtcgggctattcgctcggcgag
gccgacctgctacgccgcgccatgggcaagaagatcaaggaggagatggacaagcagcgt
gcccgcttcgtcgaaggcgcggtcggcaatggcgtggtaaagccgcaggcggacctgatc
ttcgatctgctcgccaagttcgccaactacggcttcaacaagtcgcacgcggccgcctac
gccatcgtctcctaccagaccgcctatatgaaggcgcactatccggtcgagttcctggcg
gcgtcgatgacgctcgacatgtcgaacaccgacaagatcaacgatttccgccaggacgcg
atgcggctcggcatccaggtcattgcaccctcggtgcaaacctcgttccgtcctttcgag
accggcgacaaccgcatctattactcgcttgccgccatcaagggtgtcggcgaatccgcc
gtcgaccatatcgtcgccgttcgcggcgaccgtcccttcgcaagcctcgaggacttttgc
ctgcggatcgacccgaagctcctgaaccggcgtgtcttcgaaagcctgatcgccgccggc
gccttcgactgcttcggctacgaccgggccgaactgatcggcgggctcgaccgcgtcctc
ggcttcgcgcagcgggcccaggaaaacaagctgagcggccagagcgacatgttcggcgcc
ggagcggcgacagggccggagaagattgcgctgccgacctatacgccctggcttgcctcg
gagaaactgcaccgggagttccaggtgctcggcttctacctttccgcccatccgctcgac
acctacaacaagctcctggcgaagatgcgcgtgcagaccttcacggatttctcggcggcg
gtgaagcaaggggcgagtgcgggccggcttgccggcaccgtgacatcgaagcaggagcgc
aagacgcgcaccggcaacaagatgggcatcgttgccttctctgacgcgtcaggccagttc
gaggcggtgctcttctcggaaatgctgaaccagtatcgcgatctgctggaggccggcaaa
tcgctggtgatgaccgtggatgcggaggagcggccagaagggatcggcctacgcatccgc
acgcttcggtcgctcgaagaagaatcgctgcagatgcagaaggcgctgcgcgtctatgtg
cgcgattgcggccccttgcgttcgatcgcctcgcaccttaacgccaagggagacggcctc
gtctcgttcatcgtcatcaaggacaacgggcagcgggagatcgaggtcgagctcagcgag
aaatatcgcatctcgccggagatcgccgccgcccttcgatccgcgccaggcgttgtggac
gtcgagctcgtatag
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